Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21465

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21464 and SM_b21465 are separated by 100 nucleotidesSM_b21465 and SM_b21466 overlap by 4 nucleotides SM_b21464: SM_b21464 - GntR family transcriptional regulator, at 1,391,174 to 1,391,947 _b21464 SM_b21465: SM_b21465 - HlyD family protein secretion protein, at 1,392,048 to 1,393,367 _b21465 SM_b21466: SM_b21466 - ABC transporter ATP-binding protein, at 1,393,364 to 1,395,124 _b21466 Position (kb) 1392 1393 1394Strain fitness (log2 ratio) -1 0 1 2at 1391.237 kb on + strandat 1391.299 kb on + strand, within SM_b21464at 1391.300 kb on - strand, within SM_b21464at 1391.333 kb on + strand, within SM_b21464at 1391.420 kb on + strand, within SM_b21464at 1391.421 kb on - strand, within SM_b21464at 1391.421 kb on - strand, within SM_b21464at 1391.470 kb on + strand, within SM_b21464at 1391.622 kb on + strand, within SM_b21464at 1391.712 kb on - strand, within SM_b21464at 1391.733 kb on - strand, within SM_b21464at 1391.778 kb on + strand, within SM_b21464at 1391.779 kb on - strand, within SM_b21464at 1391.945 kb on + strandat 1391.945 kb on + strandat 1391.967 kb on + strandat 1391.992 kb on + strandat 1391.993 kb on - strandat 1391.993 kb on - strandat 1391.993 kb on - strandat 1392.027 kb on - strandat 1392.027 kb on - strandat 1392.029 kb on + strandat 1392.157 kb on + strandat 1392.220 kb on + strand, within SM_b21465at 1392.220 kb on + strand, within SM_b21465at 1392.220 kb on + strand, within SM_b21465at 1392.221 kb on - strand, within SM_b21465at 1392.370 kb on - strand, within SM_b21465at 1392.370 kb on - strand, within SM_b21465at 1392.452 kb on + strand, within SM_b21465at 1392.452 kb on + strand, within SM_b21465at 1392.545 kb on - strand, within SM_b21465at 1392.545 kb on - strand, within SM_b21465at 1392.822 kb on + strand, within SM_b21465at 1392.823 kb on - strand, within SM_b21465at 1392.823 kb on - strand, within SM_b21465at 1392.933 kb on + strand, within SM_b21465at 1393.343 kb on + strandat 1393.344 kb on - strandat 1393.344 kb on - strandat 1393.344 kb on - strandat 1393.344 kb on - strandat 1393.737 kb on + strand, within SM_b21466at 1393.738 kb on - strand, within SM_b21466

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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1,391,237 + -1.2
1,391,299 + SM_b21464 0.16 -0.8
1,391,300 - SM_b21464 0.16 -0.2
1,391,333 + SM_b21464 0.21 +0.1
1,391,420 + SM_b21464 0.32 -0.5
1,391,421 - SM_b21464 0.32 -0.6
1,391,421 - SM_b21464 0.32 -0.1
1,391,470 + SM_b21464 0.38 -0.0
1,391,622 + SM_b21464 0.58 -0.1
1,391,712 - SM_b21464 0.70 -0.2
1,391,733 - SM_b21464 0.72 -1.1
1,391,778 + SM_b21464 0.78 -0.1
1,391,779 - SM_b21464 0.78 +0.2
1,391,945 + -0.1
1,391,945 + +0.3
1,391,967 + +0.3
1,391,992 + -0.2
1,391,993 - +0.9
1,391,993 - +0.5
1,391,993 - -0.0
1,392,027 - +0.3
1,392,027 - +0.5
1,392,029 + +0.3
1,392,157 + -0.2
1,392,220 + SM_b21465 0.13 +0.0
1,392,220 + SM_b21465 0.13 +0.9
1,392,220 + SM_b21465 0.13 +0.0
1,392,221 - SM_b21465 0.13 -1.0
1,392,370 - SM_b21465 0.24 -1.3
1,392,370 - SM_b21465 0.24 +0.1
1,392,452 + SM_b21465 0.31 -0.1
1,392,452 + SM_b21465 0.31 +0.6
1,392,545 - SM_b21465 0.38 +2.4
1,392,545 - SM_b21465 0.38 +0.7
1,392,822 + SM_b21465 0.59 -0.1
1,392,823 - SM_b21465 0.59 -0.0
1,392,823 - SM_b21465 0.59 +0.1
1,392,933 + SM_b21465 0.67 -0.2
1,393,343 + +0.2
1,393,344 - -0.2
1,393,344 - +0.4
1,393,344 - +0.1
1,393,344 - -0.1
1,393,737 + SM_b21466 0.21 -0.1
1,393,738 - SM_b21466 0.21 +0.1

Or see this region's nucleotide sequence