Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21464 and SM_b21465 are separated by 100 nucleotides SM_b21465 and SM_b21466 overlap by 4 nucleotides
SM_b21464: SM_b21464 - GntR family transcriptional regulator, at 1,391,174 to 1,391,947
_b21464
SM_b21465: SM_b21465 - HlyD family protein secretion protein, at 1,392,048 to 1,393,367
_b21465
SM_b21466: SM_b21466 - ABC transporter ATP-binding protein, at 1,393,364 to 1,395,124
_b21466
Position (kb)
1392
1393
1394 Strain fitness (log2 ratio)
-1
0
1
2 at 1391.237 kb on + strand at 1391.299 kb on + strand, within SM_b21464 at 1391.300 kb on - strand, within SM_b21464 at 1391.333 kb on + strand, within SM_b21464 at 1391.420 kb on + strand, within SM_b21464 at 1391.421 kb on - strand, within SM_b21464 at 1391.421 kb on - strand, within SM_b21464 at 1391.470 kb on + strand, within SM_b21464 at 1391.622 kb on + strand, within SM_b21464 at 1391.712 kb on - strand, within SM_b21464 at 1391.733 kb on - strand, within SM_b21464 at 1391.778 kb on + strand, within SM_b21464 at 1391.779 kb on - strand, within SM_b21464 at 1391.945 kb on + strand at 1391.945 kb on + strand at 1391.967 kb on + strand at 1391.992 kb on + strand at 1391.993 kb on - strand at 1391.993 kb on - strand at 1391.993 kb on - strand at 1392.027 kb on - strand at 1392.027 kb on - strand at 1392.029 kb on + strand at 1392.157 kb on + strand at 1392.220 kb on + strand, within SM_b21465 at 1392.220 kb on + strand, within SM_b21465 at 1392.220 kb on + strand, within SM_b21465 at 1392.221 kb on - strand, within SM_b21465 at 1392.370 kb on - strand, within SM_b21465 at 1392.370 kb on - strand, within SM_b21465 at 1392.452 kb on + strand, within SM_b21465 at 1392.452 kb on + strand, within SM_b21465 at 1392.545 kb on - strand, within SM_b21465 at 1392.545 kb on - strand, within SM_b21465 at 1392.822 kb on + strand, within SM_b21465 at 1392.823 kb on - strand, within SM_b21465 at 1392.823 kb on - strand, within SM_b21465 at 1392.933 kb on + strand, within SM_b21465 at 1393.343 kb on + strand at 1393.344 kb on - strand at 1393.344 kb on - strand at 1393.344 kb on - strand at 1393.344 kb on - strand at 1393.737 kb on + strand, within SM_b21466 at 1393.738 kb on - strand, within SM_b21466
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 1,391,237 + -1.2 1,391,299 + SM_b21464 0.16 -0.8 1,391,300 - SM_b21464 0.16 -0.2 1,391,333 + SM_b21464 0.21 +0.1 1,391,420 + SM_b21464 0.32 -0.5 1,391,421 - SM_b21464 0.32 -0.6 1,391,421 - SM_b21464 0.32 -0.1 1,391,470 + SM_b21464 0.38 -0.0 1,391,622 + SM_b21464 0.58 -0.1 1,391,712 - SM_b21464 0.70 -0.2 1,391,733 - SM_b21464 0.72 -1.1 1,391,778 + SM_b21464 0.78 -0.1 1,391,779 - SM_b21464 0.78 +0.2 1,391,945 + -0.1 1,391,945 + +0.3 1,391,967 + +0.3 1,391,992 + -0.2 1,391,993 - +0.9 1,391,993 - +0.5 1,391,993 - -0.0 1,392,027 - +0.3 1,392,027 - +0.5 1,392,029 + +0.3 1,392,157 + -0.2 1,392,220 + SM_b21465 0.13 +0.0 1,392,220 + SM_b21465 0.13 +0.9 1,392,220 + SM_b21465 0.13 +0.0 1,392,221 - SM_b21465 0.13 -1.0 1,392,370 - SM_b21465 0.24 -1.3 1,392,370 - SM_b21465 0.24 +0.1 1,392,452 + SM_b21465 0.31 -0.1 1,392,452 + SM_b21465 0.31 +0.6 1,392,545 - SM_b21465 0.38 +2.4 1,392,545 - SM_b21465 0.38 +0.7 1,392,822 + SM_b21465 0.59 -0.1 1,392,823 - SM_b21465 0.59 -0.0 1,392,823 - SM_b21465 0.59 +0.1 1,392,933 + SM_b21465 0.67 -0.2 1,393,343 + +0.2 1,393,344 - -0.2 1,393,344 - +0.4 1,393,344 - +0.1 1,393,344 - -0.1 1,393,737 + SM_b21466 0.21 -0.1 1,393,738 - SM_b21466 0.21 +0.1
Or see this region's nucleotide sequence