Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21298

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21297 and SM_b21298 are separated by 8 nucleotidesSM_b21298 and SM_b21299 are separated by 240 nucleotides SM_b21297: SM_b21297 - bifunctional penicillin-binding protein, at 872,777 to 874,918 _b21297 SM_b21298: SM_b21298 - hypothetical protein, at 874,927 to 880,374 _b21298 SM_b21299: SM_b21299 - DeoR family transcriptional regulator, at 880,615 to 881,406 _b21299 Position (kb) 874 875 876 877 878 879 880 881Strain fitness (log2 ratio) -1 0 1 2 3at 874.122 kb on - strand, within SM_b21297at 874.378 kb on - strand, within SM_b21297at 874.378 kb on - strand, within SM_b21297at 874.481 kb on - strand, within SM_b21297at 874.523 kb on + strand, within SM_b21297at 874.523 kb on + strand, within SM_b21297at 874.523 kb on + strand, within SM_b21297at 874.524 kb on - strand, within SM_b21297at 874.524 kb on - strand, within SM_b21297at 874.524 kb on - strand, within SM_b21297at 874.525 kb on + strandat 874.526 kb on - strand, within SM_b21297at 874.526 kb on - strand, within SM_b21297at 874.526 kb on - strand, within SM_b21297at 874.526 kb on - strand, within SM_b21297at 874.818 kb on - strandat 874.894 kb on - strandat 874.988 kb on + strandat 874.988 kb on + strandat 874.989 kb on - strandat 874.989 kb on - strandat 875.021 kb on + strandat 875.022 kb on - strandat 875.022 kb on - strandat 875.052 kb on - strandat 875.052 kb on - strandat 875.052 kb on - strandat 875.127 kb on + strandat 875.128 kb on - strandat 875.285 kb on + strandat 875.285 kb on + strandat 875.286 kb on - strandat 875.286 kb on - strandat 875.340 kb on - strandat 875.342 kb on + strandat 875.343 kb on - strandat 875.495 kb on + strand, within SM_b21298at 875.603 kb on + strand, within SM_b21298at 875.603 kb on + strand, within SM_b21298at 875.607 kb on + strand, within SM_b21298at 875.608 kb on - strand, within SM_b21298at 875.641 kb on + strand, within SM_b21298at 875.641 kb on + strand, within SM_b21298at 875.642 kb on - strand, within SM_b21298at 875.723 kb on + strand, within SM_b21298at 875.766 kb on + strand, within SM_b21298at 875.788 kb on - strand, within SM_b21298at 875.904 kb on + strand, within SM_b21298at 875.904 kb on + strand, within SM_b21298at 875.981 kb on + strand, within SM_b21298at 875.981 kb on + strand, within SM_b21298at 875.982 kb on - strand, within SM_b21298at 876.080 kb on + strand, within SM_b21298at 876.080 kb on + strand, within SM_b21298at 876.080 kb on + strand, within SM_b21298at 876.080 kb on + strand, within SM_b21298at 876.081 kb on - strand, within SM_b21298at 876.081 kb on - strand, within SM_b21298at 876.081 kb on - strand, within SM_b21298at 876.081 kb on - strand, within SM_b21298at 876.146 kb on + strand, within SM_b21298at 876.146 kb on + strand, within SM_b21298at 876.146 kb on + strand, within SM_b21298at 876.545 kb on + strand, within SM_b21298at 877.089 kb on - strand, within SM_b21298at 877.136 kb on + strand, within SM_b21298at 877.136 kb on + strand, within SM_b21298at 877.136 kb on + strand, within SM_b21298at 877.136 kb on + strand, within SM_b21298at 877.136 kb on + strand, within SM_b21298at 877.136 kb on + strandat 877.136 kb on + strand, within SM_b21298at 877.137 kb on - strand, within SM_b21298at 877.338 kb on - strand, within SM_b21298at 877.338 kb on - strand, within SM_b21298at 877.338 kb on - strand, within SM_b21298at 877.503 kb on - strand, within SM_b21298at 877.503 kb on - strand, within SM_b21298at 877.565 kb on + strand, within SM_b21298at 877.566 kb on - strand, within SM_b21298at 877.764 kb on - strand, within SM_b21298at 877.903 kb on + strandat 878.129 kb on + strand, within SM_b21298at 878.130 kb on - strand, within SM_b21298at 878.217 kb on - strand, within SM_b21298at 878.217 kb on - strand, within SM_b21298at 878.217 kb on - strand, within SM_b21298at 878.217 kb on - strand, within SM_b21298at 878.303 kb on - strand, within SM_b21298at 878.493 kb on + strand, within SM_b21298at 878.493 kb on + strand, within SM_b21298at 878.494 kb on - strand, within SM_b21298at 878.571 kb on - strand, within SM_b21298at 878.681 kb on + strand, within SM_b21298at 878.681 kb on + strand, within SM_b21298at 878.682 kb on - strand, within SM_b21298at 878.682 kb on - strand, within SM_b21298at 878.682 kb on - strand, within SM_b21298at 878.878 kb on - strand, within SM_b21298at 878.993 kb on + strand, within SM_b21298at 878.993 kb on + strand, within SM_b21298at 878.994 kb on - strand, within SM_b21298at 878.994 kb on - strand, within SM_b21298at 878.994 kb on - strand, within SM_b21298at 879.200 kb on + strand, within SM_b21298at 879.200 kb on + strand, within SM_b21298at 879.317 kb on - strand, within SM_b21298at 879.317 kb on - strand, within SM_b21298at 879.320 kb on + strand, within SM_b21298at 879.396 kb on - strand, within SM_b21298at 879.492 kb on - strand, within SM_b21298at 879.611 kb on + strand, within SM_b21298at 879.612 kb on - strand, within SM_b21298at 879.681 kb on - strand, within SM_b21298at 880.116 kb on + strandat 880.116 kb on + strandat 880.116 kb on + strandat 880.116 kb on + strandat 880.117 kb on - strandat 880.170 kb on - strandat 880.228 kb on + strandat 880.228 kb on + strandat 880.229 kb on - strandat 880.262 kb on + strandat 880.278 kb on + strandat 880.279 kb on - strandat 880.310 kb on - strandat 880.411 kb on + strandat 880.412 kb on - strandat 880.487 kb on + strandat 880.509 kb on + strandat 880.510 kb on - strandat 880.510 kb on - strandat 880.706 kb on + strand, within SM_b21299at 880.706 kb on + strand, within SM_b21299at 880.706 kb on + strand, within SM_b21299at 880.765 kb on + strand, within SM_b21299at 880.937 kb on - strand, within SM_b21299at 880.937 kb on - strand, within SM_b21299at 880.963 kb on + strand, within SM_b21299at 880.985 kb on - strand, within SM_b21299at 880.985 kb on - strand, within SM_b21299at 880.985 kb on - strand, within SM_b21299at 881.036 kb on + strand, within SM_b21299at 881.054 kb on - strand, within SM_b21299at 881.230 kb on + strand, within SM_b21299at 881.231 kb on - strand, within SM_b21299at 881.307 kb on + strand, within SM_b21299at 881.366 kb on - strandat 881.366 kb on - strandat 881.366 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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874,122 - SM_b21297 0.63 +0.8
874,378 - SM_b21297 0.75 -0.2
874,378 - SM_b21297 0.75 -0.3
874,481 - SM_b21297 0.80 +0.0
874,523 + SM_b21297 0.82 +0.8
874,523 + SM_b21297 0.82 -0.5
874,523 + SM_b21297 0.82 +0.3
874,524 - SM_b21297 0.82 +0.2
874,524 - SM_b21297 0.82 -0.1
874,524 - SM_b21297 0.82 +0.4
874,525 + +2.8
874,526 - SM_b21297 0.82 -1.0
874,526 - SM_b21297 0.82 -0.9
874,526 - SM_b21297 0.82 -0.2
874,526 - SM_b21297 0.82 -0.8
874,818 - +0.1
874,894 - -0.9
874,988 + +0.3
874,988 + -0.0
874,989 - -1.2
874,989 - +0.1
875,021 + +0.1
875,022 - +0.2
875,022 - +0.2
875,052 - +0.8
875,052 - +0.2
875,052 - +0.5
875,127 + +0.1
875,128 - +0.3
875,285 + +0.1
875,285 + +0.4
875,286 - +0.1
875,286 - -0.4
875,340 - -0.1
875,342 + +0.4
875,343 - -0.4
875,495 + SM_b21298 0.10 +1.0
875,603 + SM_b21298 0.12 +0.1
875,603 + SM_b21298 0.12 +0.6
875,607 + SM_b21298 0.12 -0.5
875,608 - SM_b21298 0.12 -0.4
875,641 + SM_b21298 0.13 +0.4
875,641 + SM_b21298 0.13 +0.6
875,642 - SM_b21298 0.13 -0.3
875,723 + SM_b21298 0.15 +0.8
875,766 + SM_b21298 0.15 +0.1
875,788 - SM_b21298 0.16 -0.7
875,904 + SM_b21298 0.18 -0.4
875,904 + SM_b21298 0.18 -0.0
875,981 + SM_b21298 0.19 -1.4
875,981 + SM_b21298 0.19 +0.9
875,982 - SM_b21298 0.19 +0.3
876,080 + SM_b21298 0.21 -0.3
876,080 + SM_b21298 0.21 +0.8
876,080 + SM_b21298 0.21 +0.7
876,080 + SM_b21298 0.21 -0.7
876,081 - SM_b21298 0.21 +0.2
876,081 - SM_b21298 0.21 +0.1
876,081 - SM_b21298 0.21 +1.2
876,081 - SM_b21298 0.21 +0.8
876,146 + SM_b21298 0.22 -1.3
876,146 + SM_b21298 0.22 +0.1
876,146 + SM_b21298 0.22 +0.1
876,545 + SM_b21298 0.30 +0.2
877,089 - SM_b21298 0.40 -0.0
877,136 + SM_b21298 0.41 -0.1
877,136 + SM_b21298 0.41 -0.1
877,136 + SM_b21298 0.41 +0.0
877,136 + SM_b21298 0.41 -0.0
877,136 + SM_b21298 0.41 +0.4
877,136 + +0.8
877,136 + SM_b21298 0.41 -0.0
877,137 - SM_b21298 0.41 -0.0
877,338 - SM_b21298 0.44 +0.4
877,338 - SM_b21298 0.44 +0.5
877,338 - SM_b21298 0.44 -0.6
877,503 - SM_b21298 0.47 +0.5
877,503 - SM_b21298 0.47 +0.8
877,565 + SM_b21298 0.48 -0.1
877,566 - SM_b21298 0.48 +0.1
877,764 - SM_b21298 0.52 +0.0
877,903 + +1.8
878,129 + SM_b21298 0.59 -0.2
878,130 - SM_b21298 0.59 +0.2
878,217 - SM_b21298 0.60 +0.3
878,217 - SM_b21298 0.60 +0.2
878,217 - SM_b21298 0.60 -0.2
878,217 - SM_b21298 0.60 -0.6
878,303 - SM_b21298 0.62 +0.0
878,493 + SM_b21298 0.65 +0.5
878,493 + SM_b21298 0.65 +1.4
878,494 - SM_b21298 0.65 +1.7
878,571 - SM_b21298 0.67 -0.1
878,681 + SM_b21298 0.69 -1.0
878,681 + SM_b21298 0.69 +0.4
878,682 - SM_b21298 0.69 +0.2
878,682 - SM_b21298 0.69 +0.6
878,682 - SM_b21298 0.69 -0.3
878,878 - SM_b21298 0.73 +0.2
878,993 + SM_b21298 0.75 +0.8
878,993 + SM_b21298 0.75 +0.5
878,994 - SM_b21298 0.75 -0.2
878,994 - SM_b21298 0.75 -0.4
878,994 - SM_b21298 0.75 +0.3
879,200 + SM_b21298 0.78 +0.7
879,200 + SM_b21298 0.78 -0.2
879,317 - SM_b21298 0.81 +0.3
879,317 - SM_b21298 0.81 +0.0
879,320 + SM_b21298 0.81 -0.3
879,396 - SM_b21298 0.82 +0.3
879,492 - SM_b21298 0.84 -0.6
879,611 + SM_b21298 0.86 +0.1
879,612 - SM_b21298 0.86 +0.2
879,681 - SM_b21298 0.87 -0.0
880,116 + +0.3
880,116 + +0.5
880,116 + -0.3
880,116 + +0.2
880,117 - -0.0
880,170 - +0.1
880,228 + -0.0
880,228 + +1.0
880,229 - +0.1
880,262 + +0.1
880,278 + -0.5
880,279 - +0.2
880,310 - -0.2
880,411 + -0.6
880,412 - -0.1
880,487 + +0.4
880,509 + -0.1
880,510 - -0.6
880,510 - -0.1
880,706 + SM_b21299 0.11 +0.0
880,706 + SM_b21299 0.11 -0.3
880,706 + SM_b21299 0.11 -0.3
880,765 + SM_b21299 0.19 -0.4
880,937 - SM_b21299 0.41 -0.4
880,937 - SM_b21299 0.41 +0.2
880,963 + SM_b21299 0.44 -0.7
880,985 - SM_b21299 0.47 -0.1
880,985 - SM_b21299 0.47 -0.0
880,985 - SM_b21299 0.47 -0.8
881,036 + SM_b21299 0.53 -0.1
881,054 - SM_b21299 0.55 +0.3
881,230 + SM_b21299 0.78 +0.2
881,231 - SM_b21299 0.78 +0.3
881,307 + SM_b21299 0.87 +0.0
881,366 - +0.4
881,366 - -0.0
881,366 - +0.3

Or see this region's nucleotide sequence