Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20369 and SM_b20370 overlap by 4 nucleotides SM_b20370 and SM_b20371 are separated by 44 nucleotides SM_b20371 and SM_b20372 are separated by 23 nucleotides
SM_b20369: SM_b20369 - hypothetical protein, at 381,385 to 382,626
_b20369
SM_b20370: SM_b20370 - ATP-binding transport protein, at 382,623 to 383,303
_b20370
SM_b20371: SM_b20371 - ribose-5-phosphate isomerase B, at 383,348 to 383,794
_b20371
SM_b20372: SM_b20372 - hypothetical protein, at 383,818 to 385,095
_b20372
Position (kb) 383
384 Strain fitness (log2 ratio) -1
0
1
2 at 382.432 kb on + strand, within SM_b20369 at 382.433 kb on - strand, within SM_b20369 at 382.433 kb on - strand, within SM_b20369 at 382.516 kb on + strand at 382.524 kb on - strand at 382.524 kb on - strand at 382.610 kb on + strand at 382.611 kb on - strand at 382.658 kb on + strand at 382.658 kb on + strand at 382.659 kb on - strand at 382.659 kb on - strand at 382.659 kb on - strand at 382.659 kb on - strand at 382.660 kb on + strand at 382.660 kb on + strand at 382.661 kb on - strand at 382.661 kb on - strand at 382.661 kb on - strand at 382.773 kb on + strand, within SM_b20370 at 382.774 kb on - strand, within SM_b20370 at 382.878 kb on - strand, within SM_b20370 at 382.878 kb on - strand, within SM_b20370 at 383.171 kb on - strand, within SM_b20370 at 383.301 kb on + strand at 383.302 kb on - strand at 383.428 kb on - strand, within SM_b20371 at 383.691 kb on + strand, within SM_b20371 at 383.691 kb on + strand, within SM_b20371 at 383.691 kb on + strand, within SM_b20371 at 383.692 kb on - strand, within SM_b20371 at 383.706 kb on + strand, within SM_b20371 at 383.706 kb on + strand, within SM_b20371 at 383.706 kb on + strand, within SM_b20371 at 383.706 kb on + strand, within SM_b20371 at 383.707 kb on - strand, within SM_b20371 at 383.788 kb on + strand at 383.788 kb on + strand at 383.789 kb on - strand at 383.794 kb on + strand at 383.795 kb on - strand at 383.900 kb on + strand at 384.267 kb on + strand, within SM_b20372 at 384.268 kb on - strand, within SM_b20372 at 384.359 kb on + strand, within SM_b20372 at 384.359 kb on + strand, within SM_b20372 at 384.360 kb on - strand, within SM_b20372 at 384.360 kb on - strand, within SM_b20372 at 384.360 kb on - strand, within SM_b20372 at 384.360 kb on - strand, within SM_b20372 at 384.547 kb on + strand, within SM_b20372 at 384.548 kb on - strand, within SM_b20372 at 384.627 kb on - strand, within SM_b20372 at 384.627 kb on - strand, within SM_b20372
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 382,432 + SM_b20369 0.84 +0.1 382,433 - SM_b20369 0.84 +0.5 382,433 - SM_b20369 0.84 +0.2 382,516 + -0.9 382,524 - -0.3 382,524 - +0.7 382,610 + -0.8 382,611 - +0.6 382,658 + +0.4 382,658 + -0.1 382,659 - +0.8 382,659 - -0.5 382,659 - +1.0 382,659 - +0.6 382,660 + +0.1 382,660 + -0.2 382,661 - -0.2 382,661 - +0.8 382,661 - -0.1 382,773 + SM_b20370 0.22 -0.3 382,774 - SM_b20370 0.22 -0.3 382,878 - SM_b20370 0.37 +0.4 382,878 - SM_b20370 0.37 -0.6 383,171 - SM_b20370 0.80 -0.6 383,301 + +0.2 383,302 - +0.0 383,428 - SM_b20371 0.18 -0.3 383,691 + SM_b20371 0.77 +0.3 383,691 + SM_b20371 0.77 +0.5 383,691 + SM_b20371 0.77 +2.5 383,692 - SM_b20371 0.77 +1.9 383,706 + SM_b20371 0.80 +0.4 383,706 + SM_b20371 0.80 -0.4 383,706 + SM_b20371 0.80 +0.1 383,706 + SM_b20371 0.80 +0.0 383,707 - SM_b20371 0.80 +0.6 383,788 + -0.5 383,788 + +0.6 383,789 - -0.2 383,794 + -0.0 383,795 - -0.1 383,900 + -0.4 384,267 + SM_b20372 0.35 +0.4 384,268 - SM_b20372 0.35 -0.4 384,359 + SM_b20372 0.42 -1.1 384,359 + SM_b20372 0.42 +0.7 384,360 - SM_b20372 0.42 -0.1 384,360 - SM_b20372 0.42 -0.5 384,360 - SM_b20372 0.42 +0.2 384,360 - SM_b20372 0.42 +0.4 384,547 + SM_b20372 0.57 -0.6 384,548 - SM_b20372 0.57 -0.3 384,627 - SM_b20372 0.63 -0.5 384,627 - SM_b20372 0.63 +0.5
Or see this region's nucleotide sequence