Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20054

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20049 and SM_b20050 are separated by 143 nucleotidesSM_b20050 and SM_b20054 are separated by 95 nucleotidesSM_b20054 and SM_b20055 are separated by 147 nucleotides SM_b20049: SM_b20049 - elongation factor G, at 60,310 to 62,271 _b20049 SM_b20050: SM_b20050 - hypothetical protein, at 62,415 to 62,924 _b20050 SM_b20054: SM_b20054 - non-heme chloroperoxidase, at 63,020 to 63,847 _b20054 SM_b20055: SM_b20055 - transcriptional regulator, at 63,995 to 64,984 _b20055 Position (kb) 63 64Strain fitness (log2 ratio) -3 -2 -1 0 1at 62.213 kb on - strandat 62.283 kb on + strandat 62.284 kb on - strandat 62.376 kb on + strandat 62.605 kb on + strand, within SM_b20050at 62.606 kb on - strand, within SM_b20050at 62.719 kb on - strand, within SM_b20050at 62.977 kb on - strandat 62.999 kb on - strandat 62.999 kb on - strandat 62.999 kb on - strandat 63.066 kb on + strandat 63.066 kb on + strandat 63.066 kb on + strandat 63.066 kb on + strandat 63.067 kb on - strandat 63.067 kb on - strandat 63.099 kb on + strandat 63.110 kb on + strand, within SM_b20054at 63.351 kb on + strand, within SM_b20054at 63.352 kb on - strand, within SM_b20054at 63.397 kb on - strand, within SM_b20054at 63.699 kb on + strand, within SM_b20054at 63.737 kb on + strand, within SM_b20054at 63.737 kb on + strand, within SM_b20054at 63.807 kb on + strandat 63.807 kb on + strandat 63.807 kb on + strandat 63.895 kb on + strandat 63.895 kb on + strandat 63.895 kb on + strandat 63.896 kb on - strandat 63.963 kb on + strandat 63.963 kb on + strandat 63.964 kb on - strandat 63.964 kb on - strandat 64.561 kb on - strand, within SM_b20055at 64.619 kb on + strand, within SM_b20055

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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62,213 - -0.1
62,283 + +1.4
62,284 - -0.4
62,376 + +0.3
62,605 + SM_b20050 0.37 +0.3
62,606 - SM_b20050 0.37 -1.4
62,719 - SM_b20050 0.60 -0.1
62,977 - -0.2
62,999 - -0.0
62,999 - -0.2
62,999 - +0.1
63,066 + -0.3
63,066 + -0.5
63,066 + -0.4
63,066 + -0.7
63,067 - -0.4
63,067 - -1.0
63,099 + -0.1
63,110 + SM_b20054 0.11 -0.4
63,351 + SM_b20054 0.40 -2.9
63,352 - SM_b20054 0.40 -2.0
63,397 - SM_b20054 0.46 -0.7
63,699 + SM_b20054 0.82 -0.7
63,737 + SM_b20054 0.87 -0.1
63,737 + SM_b20054 0.87 +0.2
63,807 + -0.1
63,807 + +0.0
63,807 + +0.5
63,895 + -0.1
63,895 + -0.6
63,895 + -0.0
63,896 - +0.8
63,963 + -0.0
63,963 + +0.5
63,964 - -0.1
63,964 - -0.1
64,561 - SM_b20055 0.57 -2.3
64,619 + SM_b20055 0.63 -0.1

Or see this region's nucleotide sequence