Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5188 and Pf6N2E2_5189 are separated by 51 nucleotides Pf6N2E2_5189 and Pf6N2E2_5190 are separated by 132 nucleotides Pf6N2E2_5190 and Pf6N2E2_5191 are separated by 10 nucleotides Pf6N2E2_5191 and Pf6N2E2_5192 are separated by 179 nucleotides
Pf6N2E2_5188 - Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-), at 5,984,722 to 5,985,174
_5188
Pf6N2E2_5189 - Phosphotransferase system, HPr-related proteins, at 5,985,226 to 5,985,630
_5189
Pf6N2E2_5190 - Carbonic anhydrase (EC 4.2.1.1), at 5,985,763 to 5,986,407
_5190
Pf6N2E2_5191 - Conserved domain protein, at 5,986,418 to 5,986,945
_5191
Pf6N2E2_5192 - FIG00953119: hypothetical protein, at 5,987,125 to 5,988,285
_5192
Position (kb) 5985
5986
5987 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5984.788 kb on + strand, within Pf6N2E2_5188 at 5984.788 kb on + strand, within Pf6N2E2_5188 at 5984.797 kb on + strand, within Pf6N2E2_5188 at 5984.798 kb on - strand, within Pf6N2E2_5188 at 5984.846 kb on - strand, within Pf6N2E2_5188 at 5985.004 kb on + strand, within Pf6N2E2_5188 at 5985.004 kb on + strand, within Pf6N2E2_5188 at 5985.004 kb on + strand, within Pf6N2E2_5188 at 5985.005 kb on - strand, within Pf6N2E2_5188 at 5985.005 kb on - strand, within Pf6N2E2_5188 at 5985.070 kb on + strand, within Pf6N2E2_5188 at 5985.070 kb on + strand, within Pf6N2E2_5188 at 5985.112 kb on + strand, within Pf6N2E2_5188 at 5985.295 kb on - strand, within Pf6N2E2_5189 at 5985.643 kb on + strand at 5985.644 kb on - strand at 5985.655 kb on + strand at 5985.655 kb on + strand at 5985.656 kb on - strand at 5985.742 kb on + strand at 5985.742 kb on + strand at 5985.742 kb on + strand at 5985.742 kb on + strand at 5985.773 kb on + strand at 5985.773 kb on + strand at 5985.773 kb on + strand at 5985.774 kb on - strand at 5985.790 kb on - strand at 5985.871 kb on + strand, within Pf6N2E2_5190 at 5985.947 kb on + strand, within Pf6N2E2_5190 at 5985.947 kb on + strand, within Pf6N2E2_5190 at 5985.947 kb on + strand, within Pf6N2E2_5190 at 5985.947 kb on + strand, within Pf6N2E2_5190 at 5985.948 kb on - strand, within Pf6N2E2_5190 at 5985.948 kb on - strand, within Pf6N2E2_5190 at 5985.948 kb on - strand, within Pf6N2E2_5190 at 5985.968 kb on + strand, within Pf6N2E2_5190 at 5985.968 kb on + strand, within Pf6N2E2_5190 at 5985.968 kb on + strand, within Pf6N2E2_5190 at 5985.968 kb on + strand, within Pf6N2E2_5190 at 5985.968 kb on + strand, within Pf6N2E2_5190 at 5985.968 kb on + strand, within Pf6N2E2_5190 at 5985.968 kb on + strand, within Pf6N2E2_5190 at 5985.969 kb on - strand, within Pf6N2E2_5190 at 5985.969 kb on - strand, within Pf6N2E2_5190 at 5985.969 kb on - strand, within Pf6N2E2_5190 at 5985.969 kb on - strand, within Pf6N2E2_5190 at 5985.969 kb on - strand, within Pf6N2E2_5190 at 5985.969 kb on - strand, within Pf6N2E2_5190 at 5985.969 kb on - strand, within Pf6N2E2_5190 at 5985.969 kb on - strand, within Pf6N2E2_5190 at 5986.141 kb on + strand, within Pf6N2E2_5190 at 5986.142 kb on - strand, within Pf6N2E2_5190 at 5986.142 kb on - strand, within Pf6N2E2_5190 at 5986.142 kb on - strand, within Pf6N2E2_5190 at 5986.142 kb on - strand, within Pf6N2E2_5190 at 5986.144 kb on + strand, within Pf6N2E2_5190 at 5986.144 kb on + strand, within Pf6N2E2_5190 at 5986.144 kb on + strand, within Pf6N2E2_5190 at 5986.144 kb on + strand, within Pf6N2E2_5190 at 5986.145 kb on - strand, within Pf6N2E2_5190 at 5986.145 kb on - strand, within Pf6N2E2_5190 at 5986.145 kb on - strand, within Pf6N2E2_5190 at 5986.245 kb on + strand, within Pf6N2E2_5190 at 5986.245 kb on + strand, within Pf6N2E2_5190 at 5986.306 kb on + strand, within Pf6N2E2_5190 at 5986.306 kb on + strand, within Pf6N2E2_5190 at 5986.307 kb on - strand, within Pf6N2E2_5190 at 5986.307 kb on - strand, within Pf6N2E2_5190 at 5986.307 kb on - strand, within Pf6N2E2_5190 at 5986.516 kb on - strand, within Pf6N2E2_5191 at 5986.516 kb on - strand, within Pf6N2E2_5191 at 5986.516 kb on - strand, within Pf6N2E2_5191 at 5986.545 kb on + strand, within Pf6N2E2_5191 at 5986.569 kb on + strand, within Pf6N2E2_5191 at 5986.643 kb on + strand, within Pf6N2E2_5191 at 5986.643 kb on + strand, within Pf6N2E2_5191 at 5986.643 kb on + strand, within Pf6N2E2_5191 at 5986.644 kb on - strand, within Pf6N2E2_5191 at 5986.692 kb on + strand, within Pf6N2E2_5191 at 5986.692 kb on + strand, within Pf6N2E2_5191 at 5986.692 kb on + strand, within Pf6N2E2_5191 at 5986.692 kb on + strand, within Pf6N2E2_5191 at 5986.692 kb on + strand, within Pf6N2E2_5191 at 5986.692 kb on + strand, within Pf6N2E2_5191 at 5986.692 kb on + strand, within Pf6N2E2_5191 at 5986.692 kb on + strand, within Pf6N2E2_5191 at 5986.692 kb on + strand, within Pf6N2E2_5191 at 5986.692 kb on + strand, within Pf6N2E2_5191 at 5986.692 kb on + strand, within Pf6N2E2_5191 at 5986.692 kb on + strand, within Pf6N2E2_5191 at 5986.692 kb on + strand, within Pf6N2E2_5191 at 5986.692 kb on + strand, within Pf6N2E2_5191 at 5986.692 kb on + strand, within Pf6N2E2_5191 at 5986.692 kb on + strand, within Pf6N2E2_5191 at 5986.692 kb on + strand, within Pf6N2E2_5191 at 5986.692 kb on + strand, within Pf6N2E2_5191 at 5986.692 kb on + strand, within Pf6N2E2_5191 at 5986.692 kb on + strand, within Pf6N2E2_5191 at 5986.692 kb on + strand, within Pf6N2E2_5191 at 5986.693 kb on - strand, within Pf6N2E2_5191 at 5986.693 kb on - strand, within Pf6N2E2_5191 at 5986.693 kb on - strand, within Pf6N2E2_5191 at 5986.693 kb on - strand, within Pf6N2E2_5191 at 5986.693 kb on - strand, within Pf6N2E2_5191 at 5986.693 kb on - strand, within Pf6N2E2_5191 at 5986.693 kb on - strand, within Pf6N2E2_5191 at 5986.693 kb on - strand, within Pf6N2E2_5191 at 5986.693 kb on - strand, within Pf6N2E2_5191 at 5986.693 kb on - strand, within Pf6N2E2_5191 at 5986.693 kb on - strand, within Pf6N2E2_5191 at 5986.693 kb on - strand, within Pf6N2E2_5191 at 5986.894 kb on - strand at 5986.894 kb on - strand at 5986.939 kb on + strand at 5986.939 kb on + strand at 5986.939 kb on + strand at 5986.940 kb on - strand at 5986.964 kb on + strand at 5987.022 kb on + strand at 5987.022 kb on + strand at 5987.023 kb on - strand at 5987.050 kb on + strand at 5987.050 kb on + strand at 5987.050 kb on + strand at 5987.050 kb on + strand at 5987.050 kb on + strand at 5987.050 kb on + strand at 5987.050 kb on + strand at 5987.051 kb on - strand at 5987.051 kb on - strand at 5987.051 kb on - strand at 5987.051 kb on - strand at 5987.051 kb on - strand at 5987.051 kb on - strand at 5987.051 kb on - strand at 5987.156 kb on - strand at 5987.243 kb on + strand, within Pf6N2E2_5192 at 5987.243 kb on + strand, within Pf6N2E2_5192 at 5987.243 kb on + strand, within Pf6N2E2_5192 at 5987.243 kb on + strand, within Pf6N2E2_5192
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 5,984,788 + Pf6N2E2_5188 0.15 +1.2 5,984,788 + Pf6N2E2_5188 0.15 +1.9 5,984,797 + Pf6N2E2_5188 0.17 -0.0 5,984,798 - Pf6N2E2_5188 0.17 +0.8 5,984,846 - Pf6N2E2_5188 0.27 +0.4 5,985,004 + Pf6N2E2_5188 0.62 +0.8 5,985,004 + Pf6N2E2_5188 0.62 +1.1 5,985,004 + Pf6N2E2_5188 0.62 +1.9 5,985,005 - Pf6N2E2_5188 0.62 +0.8 5,985,005 - Pf6N2E2_5188 0.62 +1.0 5,985,070 + Pf6N2E2_5188 0.77 +0.9 5,985,070 + Pf6N2E2_5188 0.77 +0.8 5,985,112 + Pf6N2E2_5188 0.86 +1.0 5,985,295 - Pf6N2E2_5189 0.17 +1.2 5,985,643 + -0.3 5,985,644 - -0.2 5,985,655 + -0.0 5,985,655 + +1.2 5,985,656 - -0.1 5,985,742 + -0.3 5,985,742 + +0.1 5,985,742 + +0.4 5,985,742 + +0.6 5,985,773 + -2.0 5,985,773 + -2.1 5,985,773 + -0.2 5,985,774 - -1.4 5,985,790 - -1.4 5,985,871 + Pf6N2E2_5190 0.17 -1.5 5,985,947 + Pf6N2E2_5190 0.29 -0.4 5,985,947 + Pf6N2E2_5190 0.29 -1.2 5,985,947 + Pf6N2E2_5190 0.29 -1.7 5,985,947 + Pf6N2E2_5190 0.29 -1.4 5,985,948 - Pf6N2E2_5190 0.29 -2.2 5,985,948 - Pf6N2E2_5190 0.29 -1.6 5,985,948 - Pf6N2E2_5190 0.29 -1.3 5,985,968 + Pf6N2E2_5190 0.32 -1.8 5,985,968 + Pf6N2E2_5190 0.32 -0.6 5,985,968 + Pf6N2E2_5190 0.32 -3.3 5,985,968 + Pf6N2E2_5190 0.32 -0.7 5,985,968 + Pf6N2E2_5190 0.32 -1.6 5,985,968 + Pf6N2E2_5190 0.32 -1.1 5,985,968 + Pf6N2E2_5190 0.32 -1.5 5,985,969 - Pf6N2E2_5190 0.32 -0.2 5,985,969 - Pf6N2E2_5190 0.32 -1.7 5,985,969 - Pf6N2E2_5190 0.32 -2.7 5,985,969 - Pf6N2E2_5190 0.32 +0.4 5,985,969 - Pf6N2E2_5190 0.32 -1.7 5,985,969 - Pf6N2E2_5190 0.32 -1.5 5,985,969 - Pf6N2E2_5190 0.32 -2.5 5,985,969 - Pf6N2E2_5190 0.32 -1.2 5,986,141 + Pf6N2E2_5190 0.59 -0.4 5,986,142 - Pf6N2E2_5190 0.59 -1.1 5,986,142 - Pf6N2E2_5190 0.59 -0.3 5,986,142 - Pf6N2E2_5190 0.59 -2.6 5,986,142 - Pf6N2E2_5190 0.59 -0.6 5,986,144 + Pf6N2E2_5190 0.59 -0.7 5,986,144 + Pf6N2E2_5190 0.59 -3.4 5,986,144 + Pf6N2E2_5190 0.59 -2.2 5,986,144 + Pf6N2E2_5190 0.59 -0.6 5,986,145 - Pf6N2E2_5190 0.59 -1.9 5,986,145 - Pf6N2E2_5190 0.59 -0.5 5,986,145 - Pf6N2E2_5190 0.59 -1.4 5,986,245 + Pf6N2E2_5190 0.75 +0.1 5,986,245 + Pf6N2E2_5190 0.75 -2.0 5,986,306 + Pf6N2E2_5190 0.84 -1.2 5,986,306 + Pf6N2E2_5190 0.84 -0.8 5,986,307 - Pf6N2E2_5190 0.84 -0.7 5,986,307 - Pf6N2E2_5190 0.84 -1.6 5,986,307 - Pf6N2E2_5190 0.84 -1.5 5,986,516 - Pf6N2E2_5191 0.19 -1.3 5,986,516 - Pf6N2E2_5191 0.19 -1.0 5,986,516 - Pf6N2E2_5191 0.19 -0.1 5,986,545 + Pf6N2E2_5191 0.24 +0.2 5,986,569 + Pf6N2E2_5191 0.29 -0.5 5,986,643 + Pf6N2E2_5191 0.43 +0.4 5,986,643 + Pf6N2E2_5191 0.43 +0.4 5,986,643 + Pf6N2E2_5191 0.43 -0.2 5,986,644 - Pf6N2E2_5191 0.43 -0.4 5,986,692 + Pf6N2E2_5191 0.52 +0.0 5,986,692 + Pf6N2E2_5191 0.52 +0.2 5,986,692 + Pf6N2E2_5191 0.52 +0.4 5,986,692 + Pf6N2E2_5191 0.52 -0.3 5,986,692 + Pf6N2E2_5191 0.52 +0.3 5,986,692 + Pf6N2E2_5191 0.52 +1.2 5,986,692 + Pf6N2E2_5191 0.52 +0.6 5,986,692 + Pf6N2E2_5191 0.52 +0.1 5,986,692 + Pf6N2E2_5191 0.52 +0.8 5,986,692 + Pf6N2E2_5191 0.52 +0.6 5,986,692 + Pf6N2E2_5191 0.52 +0.0 5,986,692 + Pf6N2E2_5191 0.52 -0.2 5,986,692 + Pf6N2E2_5191 0.52 +0.6 5,986,692 + Pf6N2E2_5191 0.52 +1.1 5,986,692 + Pf6N2E2_5191 0.52 +1.7 5,986,692 + Pf6N2E2_5191 0.52 -1.0 5,986,692 + Pf6N2E2_5191 0.52 -0.1 5,986,692 + Pf6N2E2_5191 0.52 +1.2 5,986,692 + Pf6N2E2_5191 0.52 -0.5 5,986,692 + Pf6N2E2_5191 0.52 +1.1 5,986,692 + Pf6N2E2_5191 0.52 -0.4 5,986,693 - Pf6N2E2_5191 0.52 -0.5 5,986,693 - Pf6N2E2_5191 0.52 +0.0 5,986,693 - Pf6N2E2_5191 0.52 -0.9 5,986,693 - Pf6N2E2_5191 0.52 +0.1 5,986,693 - Pf6N2E2_5191 0.52 -0.0 5,986,693 - Pf6N2E2_5191 0.52 +0.9 5,986,693 - Pf6N2E2_5191 0.52 -0.6 5,986,693 - Pf6N2E2_5191 0.52 +1.1 5,986,693 - Pf6N2E2_5191 0.52 +0.4 5,986,693 - Pf6N2E2_5191 0.52 -0.0 5,986,693 - Pf6N2E2_5191 0.52 +0.4 5,986,693 - Pf6N2E2_5191 0.52 +0.2 5,986,894 - +0.7 5,986,894 - -1.3 5,986,939 + -0.4 5,986,939 + -0.4 5,986,939 + +0.6 5,986,940 - -0.3 5,986,964 + -0.1 5,987,022 + +0.6 5,987,022 + +0.5 5,987,023 - +0.2 5,987,050 + +0.2 5,987,050 + -0.8 5,987,050 + +0.1 5,987,050 + +1.2 5,987,050 + +1.6 5,987,050 + +0.3 5,987,050 + +0.7 5,987,051 - +0.1 5,987,051 - +0.3 5,987,051 - +0.3 5,987,051 - +0.0 5,987,051 - +1.1 5,987,051 - -0.3 5,987,051 - -0.3 5,987,156 - -0.0 5,987,243 + Pf6N2E2_5192 0.10 +0.1 5,987,243 + Pf6N2E2_5192 0.10 +0.5 5,987,243 + Pf6N2E2_5192 0.10 +0.6 5,987,243 + Pf6N2E2_5192 0.10 +1.1
Or see this region's nucleotide sequence