Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_844

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_843 and Pf1N1B4_844 are separated by 59 nucleotidesPf1N1B4_844 and Pf1N1B4_845 are separated by 3 nucleotides Pf1N1B4_843 - Transcriptional regulator, LysR family, at 971,292 to 972,242 _843 Pf1N1B4_844 - Exodeoxyribonuclease VII large subunit (EC 3.1.11.6), at 972,302 to 973,708 _844 Pf1N1B4_845 - Membrane proteins related to metalloendopeptidases, at 973,712 to 974,533 _845 Position (kb) 972 973 974Strain fitness (log2 ratio) -2 -1 0 1 2at 971.367 kb on + strandat 971.372 kb on + strandat 971.540 kb on + strand, within Pf1N1B4_843at 971.541 kb on - strand, within Pf1N1B4_843at 971.600 kb on + strand, within Pf1N1B4_843at 971.600 kb on + strand, within Pf1N1B4_843at 971.601 kb on - strand, within Pf1N1B4_843at 971.601 kb on - strand, within Pf1N1B4_843at 971.634 kb on + strand, within Pf1N1B4_843at 971.784 kb on + strand, within Pf1N1B4_843at 971.784 kb on + strand, within Pf1N1B4_843at 971.784 kb on + strand, within Pf1N1B4_843at 971.816 kb on + strand, within Pf1N1B4_843at 971.816 kb on + strandat 971.922 kb on + strand, within Pf1N1B4_843at 971.922 kb on + strand, within Pf1N1B4_843at 971.922 kb on + strand, within Pf1N1B4_843at 971.922 kb on + strand, within Pf1N1B4_843at 971.923 kb on - strand, within Pf1N1B4_843at 972.161 kb on + strandat 972.161 kb on + strandat 972.161 kb on + strandat 972.161 kb on + strandat 972.162 kb on - strandat 972.162 kb on - strandat 972.167 kb on + strandat 972.167 kb on + strandat 972.168 kb on - strandat 972.168 kb on - strandat 972.168 kb on - strandat 972.227 kb on + strandat 972.228 kb on - strandat 972.228 kb on - strandat 972.228 kb on - strandat 972.241 kb on - strandat 972.316 kb on + strandat 972.317 kb on - strandat 972.334 kb on + strandat 972.453 kb on + strand, within Pf1N1B4_844at 972.488 kb on + strand, within Pf1N1B4_844at 972.488 kb on + strand, within Pf1N1B4_844at 972.488 kb on + strand, within Pf1N1B4_844at 972.488 kb on + strand, within Pf1N1B4_844at 972.488 kb on + strand, within Pf1N1B4_844at 972.488 kb on + strand, within Pf1N1B4_844at 972.489 kb on - strand, within Pf1N1B4_844at 972.489 kb on - strand, within Pf1N1B4_844at 972.489 kb on - strand, within Pf1N1B4_844at 972.489 kb on - strand, within Pf1N1B4_844at 972.489 kb on - strand, within Pf1N1B4_844at 972.489 kb on - strand, within Pf1N1B4_844at 972.489 kb on - strand, within Pf1N1B4_844at 972.630 kb on - strand, within Pf1N1B4_844at 973.237 kb on + strand, within Pf1N1B4_844at 973.238 kb on - strand, within Pf1N1B4_844at 973.238 kb on - strand, within Pf1N1B4_844at 973.636 kb on - strandat 973.636 kb on - strandat 973.726 kb on - strandat 973.775 kb on + strandat 973.775 kb on + strandat 973.775 kb on + strandat 973.775 kb on + strandat 973.775 kb on + strandat 973.775 kb on + strandat 973.775 kb on + strandat 973.775 kb on + strandat 973.775 kb on + strandat 973.775 kb on + strandat 973.775 kb on + strandat 973.775 kb on + strandat 973.775 kb on + strandat 973.776 kb on - strandat 973.776 kb on - strandat 973.776 kb on - strandat 973.776 kb on - strandat 973.776 kb on - strandat 973.776 kb on - strandat 973.776 kb on - strandat 973.776 kb on - strandat 973.776 kb on - strandat 973.776 kb on - strandat 973.862 kb on + strand, within Pf1N1B4_845at 973.863 kb on - strand, within Pf1N1B4_845at 973.863 kb on - strand, within Pf1N1B4_845at 973.935 kb on + strand, within Pf1N1B4_845at 973.935 kb on + strandat 974.003 kb on + strand, within Pf1N1B4_845at 974.215 kb on + strand, within Pf1N1B4_845at 974.215 kb on + strand, within Pf1N1B4_845at 974.215 kb on + strand, within Pf1N1B4_845at 974.216 kb on - strand, within Pf1N1B4_845at 974.216 kb on - strand, within Pf1N1B4_845at 974.216 kb on - strand, within Pf1N1B4_845at 974.216 kb on - strand, within Pf1N1B4_845at 974.216 kb on - strand, within Pf1N1B4_845at 974.216 kb on - strand, within Pf1N1B4_845at 974.304 kb on - strand, within Pf1N1B4_845at 974.304 kb on - strand, within Pf1N1B4_845at 974.304 kb on - strand, within Pf1N1B4_845at 974.368 kb on + strand, within Pf1N1B4_845at 974.368 kb on + strand, within Pf1N1B4_845at 974.368 kb on + strand, within Pf1N1B4_845at 974.369 kb on - strand, within Pf1N1B4_845at 974.369 kb on - strand, within Pf1N1B4_845at 974.461 kb on + strandat 974.461 kb on + strandat 974.462 kb on - strandat 974.462 kb on - strandat 974.656 kb on - strandat 974.656 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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971,367 + +0.4
971,372 + -0.2
971,540 + Pf1N1B4_843 0.26 +0.4
971,541 - Pf1N1B4_843 0.26 -0.3
971,600 + Pf1N1B4_843 0.32 +0.4
971,600 + Pf1N1B4_843 0.32 +0.9
971,601 - Pf1N1B4_843 0.32 +0.2
971,601 - Pf1N1B4_843 0.32 -1.6
971,634 + Pf1N1B4_843 0.36 +0.8
971,784 + Pf1N1B4_843 0.52 -1.5
971,784 + Pf1N1B4_843 0.52 -0.2
971,784 + Pf1N1B4_843 0.52 +0.2
971,816 + Pf1N1B4_843 0.55 +0.4
971,816 + -1.2
971,922 + Pf1N1B4_843 0.66 +0.4
971,922 + Pf1N1B4_843 0.66 -0.2
971,922 + Pf1N1B4_843 0.66 -0.5
971,922 + Pf1N1B4_843 0.66 -0.2
971,923 - Pf1N1B4_843 0.66 +0.5
972,161 + -1.2
972,161 + -0.2
972,161 + +0.0
972,161 + -0.3
972,162 - +0.4
972,162 - -2.6
972,167 + -0.6
972,167 + -0.6
972,168 - +0.7
972,168 - +0.4
972,168 - -1.6
972,227 + -0.2
972,228 - +0.0
972,228 - -1.8
972,228 - +1.4
972,241 - -0.6
972,316 + +0.0
972,317 - +0.4
972,334 + -0.0
972,453 + Pf1N1B4_844 0.11 -1.1
972,488 + Pf1N1B4_844 0.13 -0.6
972,488 + Pf1N1B4_844 0.13 -0.1
972,488 + Pf1N1B4_844 0.13 -1.2
972,488 + Pf1N1B4_844 0.13 -1.0
972,488 + Pf1N1B4_844 0.13 +0.4
972,488 + Pf1N1B4_844 0.13 -2.2
972,489 - Pf1N1B4_844 0.13 -1.5
972,489 - Pf1N1B4_844 0.13 -1.0
972,489 - Pf1N1B4_844 0.13 +0.9
972,489 - Pf1N1B4_844 0.13 +0.7
972,489 - Pf1N1B4_844 0.13 -1.6
972,489 - Pf1N1B4_844 0.13 -0.6
972,489 - Pf1N1B4_844 0.13 -1.5
972,630 - Pf1N1B4_844 0.23 +1.4
973,237 + Pf1N1B4_844 0.66 -0.6
973,238 - Pf1N1B4_844 0.67 -1.0
973,238 - Pf1N1B4_844 0.67 +1.9
973,636 - -1.8
973,636 - +0.5
973,726 - -0.6
973,775 + +0.4
973,775 + +0.7
973,775 + -0.6
973,775 + -0.2
973,775 + -0.6
973,775 + -0.1
973,775 + +0.1
973,775 + -1.6
973,775 + -0.1
973,775 + -0.6
973,775 + +0.6
973,775 + +0.2
973,775 + -0.7
973,776 - +0.5
973,776 - +1.9
973,776 - +1.5
973,776 - -1.6
973,776 - -0.2
973,776 - -0.2
973,776 - -0.3
973,776 - -0.6
973,776 - +0.9
973,776 - +0.3
973,862 + Pf1N1B4_845 0.18 -0.8
973,863 - Pf1N1B4_845 0.18 -2.0
973,863 - Pf1N1B4_845 0.18 +1.4
973,935 + Pf1N1B4_845 0.27 +1.8
973,935 + +0.4
974,003 + Pf1N1B4_845 0.35 -0.9
974,215 + Pf1N1B4_845 0.61 -0.6
974,215 + Pf1N1B4_845 0.61 -0.2
974,215 + Pf1N1B4_845 0.61 +0.0
974,216 - Pf1N1B4_845 0.61 +0.8
974,216 - Pf1N1B4_845 0.61 -0.6
974,216 - Pf1N1B4_845 0.61 -0.3
974,216 - Pf1N1B4_845 0.61 +1.2
974,216 - Pf1N1B4_845 0.61 -0.2
974,216 - Pf1N1B4_845 0.61 -0.2
974,304 - Pf1N1B4_845 0.72 +0.2
974,304 - Pf1N1B4_845 0.72 +0.0
974,304 - Pf1N1B4_845 0.72 +0.1
974,368 + Pf1N1B4_845 0.80 +0.9
974,368 + Pf1N1B4_845 0.80 -1.5
974,368 + Pf1N1B4_845 0.80 +0.4
974,369 - Pf1N1B4_845 0.80 -0.1
974,369 - Pf1N1B4_845 0.80 -0.4
974,461 + -0.8
974,461 + -0.6
974,462 - -0.8
974,462 - -0.6
974,656 - -0.2
974,656 - +1.0

Or see this region's nucleotide sequence