Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_595

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_593 and Pf1N1B4_594 are separated by 3 nucleotidesPf1N1B4_594 and Pf1N1B4_595 overlap by 8 nucleotidesPf1N1B4_595 and Pf1N1B4_596 are separated by 150 nucleotides Pf1N1B4_593 - Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-), at 684,559 to 685,719 _593 Pf1N1B4_594 - Glucose ABC transport system, inner membrane component 2, at 685,723 to 686,568 _594 Pf1N1B4_595 - Glucose ABC transport system, inner membrane component 1, at 686,561 to 687,505 _595 Pf1N1B4_596 - Glucose ABC transport system, periplasmic sugar-binding protein, at 687,656 to 688,963 _596 Position (kb) 686 687 688Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 685.590 kb on + strand, within Pf1N1B4_593at 685.591 kb on - strand, within Pf1N1B4_593at 685.591 kb on - strand, within Pf1N1B4_593at 685.682 kb on + strandat 685.682 kb on + strandat 685.682 kb on + strandat 685.683 kb on - strandat 685.702 kb on + strandat 685.703 kb on - strandat 685.703 kb on - strandat 685.763 kb on + strandat 685.764 kb on - strandat 685.777 kb on + strandat 685.778 kb on - strandat 685.778 kb on - strandat 685.781 kb on + strandat 685.781 kb on + strandat 685.781 kb on + strandat 685.781 kb on + strandat 685.782 kb on - strandat 685.835 kb on + strand, within Pf1N1B4_594at 685.835 kb on + strand, within Pf1N1B4_594at 685.835 kb on + strand, within Pf1N1B4_594at 685.835 kb on + strand, within Pf1N1B4_594at 685.836 kb on - strand, within Pf1N1B4_594at 685.836 kb on - strand, within Pf1N1B4_594at 686.075 kb on + strand, within Pf1N1B4_594at 686.075 kb on + strand, within Pf1N1B4_594at 686.075 kb on + strand, within Pf1N1B4_594at 686.075 kb on + strand, within Pf1N1B4_594at 686.076 kb on - strand, within Pf1N1B4_594at 686.076 kb on - strand, within Pf1N1B4_594at 686.076 kb on - strand, within Pf1N1B4_594at 686.076 kb on - strand, within Pf1N1B4_594at 686.078 kb on + strand, within Pf1N1B4_594at 686.078 kb on + strand, within Pf1N1B4_594at 686.078 kb on + strand, within Pf1N1B4_594at 686.078 kb on + strandat 686.079 kb on - strand, within Pf1N1B4_594at 686.079 kb on - strand, within Pf1N1B4_594at 686.079 kb on - strand, within Pf1N1B4_594at 686.279 kb on + strand, within Pf1N1B4_594at 686.280 kb on - strandat 686.304 kb on + strand, within Pf1N1B4_594at 686.304 kb on + strand, within Pf1N1B4_594at 686.305 kb on - strand, within Pf1N1B4_594at 686.305 kb on - strand, within Pf1N1B4_594at 686.305 kb on - strand, within Pf1N1B4_594at 686.486 kb on + strandat 686.486 kb on + strandat 686.486 kb on + strandat 686.487 kb on - strandat 686.487 kb on - strandat 686.487 kb on - strandat 686.487 kb on - strandat 686.516 kb on + strandat 686.516 kb on + strandat 686.516 kb on + strandat 686.516 kb on + strandat 686.516 kb on + strandat 686.532 kb on + strandat 686.563 kb on - strandat 686.688 kb on + strand, within Pf1N1B4_595at 686.688 kb on + strand, within Pf1N1B4_595at 686.688 kb on + strand, within Pf1N1B4_595at 686.689 kb on - strand, within Pf1N1B4_595at 686.718 kb on + strand, within Pf1N1B4_595at 686.719 kb on - strand, within Pf1N1B4_595at 686.825 kb on + strand, within Pf1N1B4_595at 686.838 kb on + strand, within Pf1N1B4_595at 686.839 kb on - strand, within Pf1N1B4_595at 686.970 kb on + strand, within Pf1N1B4_595at 686.970 kb on + strand, within Pf1N1B4_595at 686.971 kb on - strand, within Pf1N1B4_595at 686.971 kb on - strand, within Pf1N1B4_595at 687.276 kb on + strand, within Pf1N1B4_595at 687.276 kb on + strand, within Pf1N1B4_595at 687.276 kb on + strand, within Pf1N1B4_595at 687.276 kb on + strand, within Pf1N1B4_595at 687.276 kb on + strand, within Pf1N1B4_595at 687.276 kb on + strand, within Pf1N1B4_595at 687.276 kb on + strand, within Pf1N1B4_595at 687.276 kb on + strand, within Pf1N1B4_595at 687.276 kb on + strand, within Pf1N1B4_595at 687.276 kb on + strand, within Pf1N1B4_595at 687.276 kb on + strand, within Pf1N1B4_595at 687.277 kb on - strand, within Pf1N1B4_595at 687.277 kb on - strand, within Pf1N1B4_595at 687.277 kb on - strand, within Pf1N1B4_595at 687.277 kb on - strand, within Pf1N1B4_595at 687.300 kb on + strand, within Pf1N1B4_595at 687.300 kb on + strand, within Pf1N1B4_595at 687.354 kb on + strand, within Pf1N1B4_595at 687.354 kb on + strand, within Pf1N1B4_595at 687.354 kb on + strand, within Pf1N1B4_595at 687.354 kb on + strand, within Pf1N1B4_595at 687.354 kb on + strand, within Pf1N1B4_595at 687.354 kb on + strand, within Pf1N1B4_595at 687.354 kb on + strand, within Pf1N1B4_595at 687.360 kb on + strand, within Pf1N1B4_595at 687.361 kb on - strand, within Pf1N1B4_595at 687.619 kb on + strandat 687.620 kb on - strandat 687.620 kb on - strandat 687.620 kb on - strandat 687.620 kb on - strandat 687.658 kb on - strandat 688.041 kb on + strand, within Pf1N1B4_596at 688.041 kb on + strandat 688.041 kb on + strand, within Pf1N1B4_596at 688.042 kb on - strand, within Pf1N1B4_596at 688.042 kb on - strand, within Pf1N1B4_596at 688.083 kb on + strand, within Pf1N1B4_596at 688.311 kb on + strand, within Pf1N1B4_596at 688.311 kb on + strand, within Pf1N1B4_596at 688.311 kb on + strand, within Pf1N1B4_596at 688.431 kb on + strand, within Pf1N1B4_596at 688.432 kb on - strand, within Pf1N1B4_596at 688.432 kb on - strand, within Pf1N1B4_596

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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685,590 + Pf1N1B4_593 0.89 -2.1
685,591 - Pf1N1B4_593 0.89 -2.1
685,591 - Pf1N1B4_593 0.89 -1.6
685,682 + -1.3
685,682 + -2.8
685,682 + -1.3
685,683 - -1.6
685,702 + -1.6
685,703 - +1.2
685,703 - +0.2
685,763 + -0.9
685,764 - -1.6
685,777 + -1.9
685,778 - -1.3
685,778 - -0.1
685,781 + -1.0
685,781 + -1.1
685,781 + +0.1
685,781 + -1.4
685,782 - -0.2
685,835 + Pf1N1B4_594 0.13 -1.1
685,835 + Pf1N1B4_594 0.13 -0.8
685,835 + Pf1N1B4_594 0.13 -0.9
685,835 + Pf1N1B4_594 0.13 -1.6
685,836 - Pf1N1B4_594 0.13 -1.6
685,836 - Pf1N1B4_594 0.13 -0.8
686,075 + Pf1N1B4_594 0.42 -0.1
686,075 + Pf1N1B4_594 0.42 -0.5
686,075 + Pf1N1B4_594 0.42 -1.6
686,075 + Pf1N1B4_594 0.42 +0.2
686,076 - Pf1N1B4_594 0.42 -1.3
686,076 - Pf1N1B4_594 0.42 -0.6
686,076 - Pf1N1B4_594 0.42 -1.8
686,076 - Pf1N1B4_594 0.42 +0.0
686,078 + Pf1N1B4_594 0.42 -2.8
686,078 + Pf1N1B4_594 0.42 -0.2
686,078 + Pf1N1B4_594 0.42 -1.3
686,078 + -1.1
686,079 - Pf1N1B4_594 0.42 +0.2
686,079 - Pf1N1B4_594 0.42 -0.8
686,079 - Pf1N1B4_594 0.42 -1.9
686,279 + Pf1N1B4_594 0.66 -1.7
686,280 - +1.2
686,304 + Pf1N1B4_594 0.69 +0.2
686,304 + Pf1N1B4_594 0.69 +0.1
686,305 - Pf1N1B4_594 0.69 -3.0
686,305 - Pf1N1B4_594 0.69 -0.3
686,305 - Pf1N1B4_594 0.69 -0.3
686,486 + -1.6
686,486 + -1.9
686,486 + -1.1
686,487 - -0.8
686,487 - +0.0
686,487 - -0.3
686,487 - -0.3
686,516 + +0.7
686,516 + -1.1
686,516 + -0.3
686,516 + -2.1
686,516 + -1.9
686,532 + -1.6
686,563 - -2.2
686,688 + Pf1N1B4_595 0.13 -0.8
686,688 + Pf1N1B4_595 0.13 -1.8
686,688 + Pf1N1B4_595 0.13 -0.8
686,689 - Pf1N1B4_595 0.14 -1.6
686,718 + Pf1N1B4_595 0.17 -1.9
686,719 - Pf1N1B4_595 0.17 -3.9
686,825 + Pf1N1B4_595 0.28 -1.5
686,838 + Pf1N1B4_595 0.29 -1.1
686,839 - Pf1N1B4_595 0.29 -1.8
686,970 + Pf1N1B4_595 0.43 -2.0
686,970 + Pf1N1B4_595 0.43 -1.3
686,971 - Pf1N1B4_595 0.43 -1.9
686,971 - Pf1N1B4_595 0.43 -1.3
687,276 + Pf1N1B4_595 0.76 -0.5
687,276 + Pf1N1B4_595 0.76 -1.6
687,276 + Pf1N1B4_595 0.76 -0.9
687,276 + Pf1N1B4_595 0.76 -0.8
687,276 + Pf1N1B4_595 0.76 -1.7
687,276 + Pf1N1B4_595 0.76 -1.5
687,276 + Pf1N1B4_595 0.76 -0.8
687,276 + Pf1N1B4_595 0.76 -2.0
687,276 + Pf1N1B4_595 0.76 -1.3
687,276 + Pf1N1B4_595 0.76 -0.9
687,276 + Pf1N1B4_595 0.76 -2.1
687,277 - Pf1N1B4_595 0.76 +0.5
687,277 - Pf1N1B4_595 0.76 +0.2
687,277 - Pf1N1B4_595 0.76 -0.9
687,277 - Pf1N1B4_595 0.76 -0.9
687,300 + Pf1N1B4_595 0.78 +1.8
687,300 + Pf1N1B4_595 0.78 -0.8
687,354 + Pf1N1B4_595 0.84 -1.1
687,354 + Pf1N1B4_595 0.84 -0.2
687,354 + Pf1N1B4_595 0.84 -2.2
687,354 + Pf1N1B4_595 0.84 -0.3
687,354 + Pf1N1B4_595 0.84 -1.2
687,354 + Pf1N1B4_595 0.84 -0.2
687,354 + Pf1N1B4_595 0.84 -1.6
687,360 + Pf1N1B4_595 0.85 -1.8
687,361 - Pf1N1B4_595 0.85 -1.1
687,619 + -1.1
687,620 - +0.5
687,620 - -1.0
687,620 - +0.2
687,620 - -0.1
687,658 - -1.6
688,041 + Pf1N1B4_596 0.29 -1.1
688,041 + +1.8
688,041 + Pf1N1B4_596 0.29 -0.1
688,042 - Pf1N1B4_596 0.30 -0.5
688,042 - Pf1N1B4_596 0.30 -0.1
688,083 + Pf1N1B4_596 0.33 -0.6
688,311 + Pf1N1B4_596 0.50 -1.6
688,311 + Pf1N1B4_596 0.50 -0.2
688,311 + Pf1N1B4_596 0.50 -1.6
688,431 + Pf1N1B4_596 0.59 +0.2
688,432 - Pf1N1B4_596 0.59 -2.8
688,432 - Pf1N1B4_596 0.59 +0.8

Or see this region's nucleotide sequence