Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4535 and Pf1N1B4_4536 are separated by 15 nucleotides Pf1N1B4_4536 and Pf1N1B4_4537 are separated by 74 nucleotides Pf1N1B4_4537 and Pf1N1B4_4538 are separated by 28 nucleotides Pf1N1B4_4538 and Pf1N1B4_4539 are separated by 228 nucleotides
Pf1N1B4_4535 - Uncharacterized protein ImpF, at 5,003,241 to 5,003,684
_4535
Pf1N1B4_4536 - Uncharacterized protein ImpD, at 5,003,700 to 5,004,197
_4536
Pf1N1B4_4537 - Uncharacterized protein ImpC, at 5,004,272 to 5,005,759
_4537
Pf1N1B4_4538 - Uncharacterized protein ImpB, at 5,005,788 to 5,006,336
_4538
Pf1N1B4_4539 - Uncharacterized protein homologous to Paeru. PA2364, at 5,006,565 to 5,007,014
_4539
Position (kb)
5004
5005
5006 Strain fitness (log2 ratio)
-2
-1
0
1 at 5003.667 kb on + strand at 5004.056 kb on + strand, within Pf1N1B4_4536 at 5004.226 kb on + strand at 5004.230 kb on + strand at 5004.230 kb on + strand at 5004.230 kb on + strand at 5004.231 kb on - strand at 5004.369 kb on + strand at 5004.589 kb on - strand at 5004.589 kb on - strand, within Pf1N1B4_4537 at 5004.639 kb on + strand, within Pf1N1B4_4537 at 5004.640 kb on - strand, within Pf1N1B4_4537 at 5004.812 kb on - strand, within Pf1N1B4_4537 at 5004.936 kb on + strand at 5004.937 kb on - strand, within Pf1N1B4_4537 at 5004.937 kb on - strand, within Pf1N1B4_4537 at 5004.973 kb on - strand, within Pf1N1B4_4537 at 5005.324 kb on - strand, within Pf1N1B4_4537 at 5005.641 kb on + strand at 5005.642 kb on - strand at 5005.720 kb on + strand at 5006.275 kb on + strand, within Pf1N1B4_4538 at 5006.403 kb on - strand at 5006.511 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 5,003,667 + +0.7 5,004,056 + Pf1N1B4_4536 0.71 -1.9 5,004,226 + +1.4 5,004,230 + -1.5 5,004,230 + -0.7 5,004,230 + -0.6 5,004,231 - -0.9 5,004,369 + -0.7 5,004,589 - +0.7 5,004,589 - Pf1N1B4_4537 0.21 -0.3 5,004,639 + Pf1N1B4_4537 0.25 +0.1 5,004,640 - Pf1N1B4_4537 0.25 -1.1 5,004,812 - Pf1N1B4_4537 0.36 -0.3 5,004,936 + -0.3 5,004,937 - Pf1N1B4_4537 0.45 -1.4 5,004,937 - Pf1N1B4_4537 0.45 -0.7 5,004,973 - Pf1N1B4_4537 0.47 -0.9 5,005,324 - Pf1N1B4_4537 0.71 -0.4 5,005,641 + -1.6 5,005,642 - -0.3 5,005,720 + +1.7 5,006,275 + Pf1N1B4_4538 0.89 -0.0 5,006,403 - +0.9 5,006,511 - +0.2
Or see this region's nucleotide sequence