Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3322 and Pf1N1B4_3323 are separated by 557 nucleotides Pf1N1B4_3323 and Pf1N1B4_3324 are separated by 30 nucleotides Pf1N1B4_3324 and Pf1N1B4_3325 are separated by 8 nucleotides
Pf1N1B4_3322 - L-aspartate oxidase (EC 1.4.3.16), at 3,709,341 to 3,710,957
_3322
Pf1N1B4_3323 - RNA polymerase sigma-H factor AlgT, at 3,711,515 to 3,712,096
_3323
Pf1N1B4_3324 - Sigma factor RpoE negative regulatory protein RseA, at 3,712,127 to 3,712,714
_3324
Pf1N1B4_3325 - Sigma factor RpoE negative regulatory protein RseB precursor, at 3,712,723 to 3,713,685
_3325
Position (kb)
3711
3712
3713 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3711.041 kb on + strand at 3711.041 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.044 kb on + strand at 3711.046 kb on + strand at 3711.046 kb on + strand at 3711.046 kb on + strand at 3711.046 kb on + strand at 3711.046 kb on + strand at 3711.046 kb on + strand at 3711.046 kb on + strand at 3711.048 kb on + strand at 3711.048 kb on + strand at 3711.048 kb on + strand at 3711.048 kb on + strand at 3711.048 kb on + strand at 3711.097 kb on + strand at 3711.097 kb on + strand at 3711.165 kb on + strand at 3711.165 kb on + strand at 3711.165 kb on + strand at 3711.176 kb on + strand at 3711.176 kb on + strand at 3711.224 kb on + strand at 3711.224 kb on + strand at 3711.226 kb on + strand at 3711.226 kb on + strand at 3711.226 kb on + strand at 3711.230 kb on + strand at 3711.347 kb on + strand at 3712.743 kb on + strand at 3712.931 kb on + strand, within Pf1N1B4_3325
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 3,711,041 + +1.8 3,711,041 + -0.2 3,711,044 + -2.1 3,711,044 + +0.2 3,711,044 + +2.2 3,711,044 + -0.6 3,711,044 + +0.2 3,711,044 + -0.1 3,711,044 + -1.6 3,711,044 + -1.1 3,711,044 + +0.7 3,711,044 + +0.8 3,711,044 + -0.1 3,711,044 + +0.2 3,711,044 + -1.1 3,711,044 + +0.0 3,711,044 + -0.3 3,711,046 + -0.1 3,711,046 + +3.6 3,711,046 + -1.9 3,711,046 + -1.3 3,711,046 + -0.8 3,711,046 + +0.2 3,711,046 + -1.8 3,711,048 + +0.9 3,711,048 + +1.2 3,711,048 + +0.8 3,711,048 + +0.2 3,711,048 + +0.2 3,711,097 + +0.2 3,711,097 + +0.8 3,711,165 + +0.5 3,711,165 + -0.1 3,711,165 + +0.2 3,711,176 + -1.3 3,711,176 + +1.8 3,711,224 + +0.5 3,711,224 + +1.2 3,711,226 + -0.6 3,711,226 + +0.5 3,711,226 + +1.2 3,711,230 + +0.2 3,711,347 + -1.8 3,712,743 + -0.1 3,712,931 + Pf1N1B4_3325 0.22 -0.1
Or see this region's nucleotide sequence