Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3323

Experiment: D-Galactose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_3322 and Pf1N1B4_3323 are separated by 557 nucleotidesPf1N1B4_3323 and Pf1N1B4_3324 are separated by 30 nucleotidesPf1N1B4_3324 and Pf1N1B4_3325 are separated by 8 nucleotides Pf1N1B4_3322 - L-aspartate oxidase (EC 1.4.3.16), at 3,709,341 to 3,710,957 _3322 Pf1N1B4_3323 - RNA polymerase sigma-H factor AlgT, at 3,711,515 to 3,712,096 _3323 Pf1N1B4_3324 - Sigma factor RpoE negative regulatory protein RseA, at 3,712,127 to 3,712,714 _3324 Pf1N1B4_3325 - Sigma factor RpoE negative regulatory protein RseB precursor, at 3,712,723 to 3,713,685 _3325 Position (kb) 3711 3712 3713Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3711.041 kb on + strandat 3711.041 kb on + strandat 3711.044 kb on + strandat 3711.044 kb on + strandat 3711.044 kb on + strandat 3711.044 kb on + strandat 3711.044 kb on + strandat 3711.044 kb on + strandat 3711.044 kb on + strandat 3711.044 kb on + strandat 3711.044 kb on + strandat 3711.044 kb on + strandat 3711.044 kb on + strandat 3711.044 kb on + strandat 3711.044 kb on + strandat 3711.044 kb on + strandat 3711.044 kb on + strandat 3711.046 kb on + strandat 3711.046 kb on + strandat 3711.046 kb on + strandat 3711.046 kb on + strandat 3711.046 kb on + strandat 3711.046 kb on + strandat 3711.046 kb on + strandat 3711.048 kb on + strandat 3711.048 kb on + strandat 3711.048 kb on + strandat 3711.048 kb on + strandat 3711.048 kb on + strandat 3711.097 kb on + strandat 3711.097 kb on + strandat 3711.165 kb on + strandat 3711.165 kb on + strandat 3711.165 kb on + strandat 3711.176 kb on + strandat 3711.176 kb on + strandat 3711.224 kb on + strandat 3711.224 kb on + strandat 3711.226 kb on + strandat 3711.226 kb on + strandat 3711.226 kb on + strandat 3711.230 kb on + strandat 3711.347 kb on + strandat 3712.743 kb on + strandat 3712.931 kb on + strand, within Pf1N1B4_3325

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
remove
3,711,041 + +1.8
3,711,041 + -0.2
3,711,044 + -2.1
3,711,044 + +0.2
3,711,044 + +2.2
3,711,044 + -0.6
3,711,044 + +0.2
3,711,044 + -0.1
3,711,044 + -1.6
3,711,044 + -1.1
3,711,044 + +0.7
3,711,044 + +0.8
3,711,044 + -0.1
3,711,044 + +0.2
3,711,044 + -1.1
3,711,044 + +0.0
3,711,044 + -0.3
3,711,046 + -0.1
3,711,046 + +3.6
3,711,046 + -1.9
3,711,046 + -1.3
3,711,046 + -0.8
3,711,046 + +0.2
3,711,046 + -1.8
3,711,048 + +0.9
3,711,048 + +1.2
3,711,048 + +0.8
3,711,048 + +0.2
3,711,048 + +0.2
3,711,097 + +0.2
3,711,097 + +0.8
3,711,165 + +0.5
3,711,165 + -0.1
3,711,165 + +0.2
3,711,176 + -1.3
3,711,176 + +1.8
3,711,224 + +0.5
3,711,224 + +1.2
3,711,226 + -0.6
3,711,226 + +0.5
3,711,226 + +1.2
3,711,230 + +0.2
3,711,347 + -1.8
3,712,743 + -0.1
3,712,931 + Pf1N1B4_3325 0.22 -0.1

Or see this region's nucleotide sequence