Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1934 and Pf1N1B4_1935 overlap by 4 nucleotides Pf1N1B4_1935 and Pf1N1B4_1936 are separated by 18 nucleotides Pf1N1B4_1936 and Pf1N1B4_1937 are separated by 9 nucleotides
Pf1N1B4_1934 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA, at 2,213,442 to 2,215,340
_1934
Pf1N1B4_1935 - rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB, at 2,215,337 to 2,215,981
_1935
Pf1N1B4_1936 - Chromosome (plasmid) partitioning protein ParA, at 2,216,000 to 2,216,797
_1936
Pf1N1B4_1937 - Chromosome (plasmid) partitioning protein ParB, at 2,216,807 to 2,217,679
_1937
Position (kb)
2215
2216
2217 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2216.010 kb on + strand at 2216.010 kb on + strand at 2216.010 kb on + strand at 2216.011 kb on - strand at 2216.011 kb on - strand at 2216.011 kb on - strand at 2216.060 kb on - strand at 2216.060 kb on - strand at 2216.225 kb on + strand, within Pf1N1B4_1936 at 2216.226 kb on - strand, within Pf1N1B4_1936 at 2216.226 kb on - strand, within Pf1N1B4_1936 at 2216.322 kb on + strand, within Pf1N1B4_1936 at 2216.354 kb on + strand, within Pf1N1B4_1936 at 2216.355 kb on - strand, within Pf1N1B4_1936 at 2216.360 kb on + strand, within Pf1N1B4_1936 at 2216.453 kb on + strand, within Pf1N1B4_1936 at 2216.453 kb on + strand, within Pf1N1B4_1936 at 2216.555 kb on + strand, within Pf1N1B4_1936 at 2216.555 kb on + strand, within Pf1N1B4_1936 at 2216.555 kb on + strand, within Pf1N1B4_1936 at 2216.555 kb on + strand, within Pf1N1B4_1936 at 2216.555 kb on + strand, within Pf1N1B4_1936 at 2216.556 kb on - strand, within Pf1N1B4_1936 at 2216.556 kb on - strand, within Pf1N1B4_1936 at 2216.556 kb on - strand, within Pf1N1B4_1936 at 2216.556 kb on - strand, within Pf1N1B4_1936 at 2216.624 kb on + strand, within Pf1N1B4_1936 at 2216.672 kb on + strand, within Pf1N1B4_1936 at 2216.672 kb on + strand, within Pf1N1B4_1936 at 2216.672 kb on + strand, within Pf1N1B4_1936 at 2216.723 kb on + strand at 2216.795 kb on + strand at 2216.795 kb on + strand at 2216.795 kb on + strand at 2216.893 kb on - strand at 2216.893 kb on - strand at 2216.951 kb on + strand, within Pf1N1B4_1937 at 2216.952 kb on - strand, within Pf1N1B4_1937 at 2217.610 kb on + strand at 2217.621 kb on + strand at 2217.621 kb on + strand at 2217.621 kb on + strand at 2217.694 kb on + strand at 2217.694 kb on + strand at 2217.694 kb on + strand at 2217.694 kb on + strand at 2217.730 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 2,216,010 + -0.7 2,216,010 + +1.8 2,216,010 + -1.6 2,216,011 - -0.9 2,216,011 - -0.5 2,216,011 - -0.2 2,216,060 - -1.2 2,216,060 - -0.8 2,216,225 + Pf1N1B4_1936 0.28 -1.5 2,216,226 - Pf1N1B4_1936 0.28 -0.4 2,216,226 - Pf1N1B4_1936 0.28 -0.4 2,216,322 + Pf1N1B4_1936 0.40 -1.4 2,216,354 + Pf1N1B4_1936 0.44 -0.8 2,216,355 - Pf1N1B4_1936 0.44 +0.3 2,216,360 + Pf1N1B4_1936 0.45 -0.7 2,216,453 + Pf1N1B4_1936 0.57 +2.0 2,216,453 + Pf1N1B4_1936 0.57 -1.9 2,216,555 + Pf1N1B4_1936 0.70 -0.8 2,216,555 + Pf1N1B4_1936 0.70 -1.1 2,216,555 + Pf1N1B4_1936 0.70 -1.1 2,216,555 + Pf1N1B4_1936 0.70 +0.4 2,216,555 + Pf1N1B4_1936 0.70 -2.4 2,216,556 - Pf1N1B4_1936 0.70 -1.4 2,216,556 - Pf1N1B4_1936 0.70 +0.2 2,216,556 - Pf1N1B4_1936 0.70 -0.8 2,216,556 - Pf1N1B4_1936 0.70 -1.2 2,216,624 + Pf1N1B4_1936 0.78 +1.8 2,216,672 + Pf1N1B4_1936 0.84 +0.2 2,216,672 + Pf1N1B4_1936 0.84 -0.2 2,216,672 + Pf1N1B4_1936 0.84 -0.2 2,216,723 + -1.1 2,216,795 + -1.8 2,216,795 + -0.4 2,216,795 + +1.8 2,216,893 - -0.2 2,216,893 - +0.2 2,216,951 + Pf1N1B4_1937 0.16 +1.8 2,216,952 - Pf1N1B4_1937 0.17 -0.2 2,217,610 + -0.1 2,217,621 + +0.2 2,217,621 + +1.3 2,217,621 + -1.1 2,217,694 + +1.8 2,217,694 + +1.1 2,217,694 + -1.2 2,217,694 + +0.8 2,217,730 + +1.2
Or see this region's nucleotide sequence