Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02659

Experiment: m-Inositol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02657 and CCNA_02658 are separated by 2 nucleotidesCCNA_02658 and CCNA_02659 are separated by 173 nucleotidesCCNA_02659 and CCNA_02660 are separated by 50 nucleotidesCCNA_02660 and CCNA_02661 are separated by 71 nucleotides CCNA_02657: CCNA_02657 - hypothetical protein, at 2,810,193 to 2,810,789 _02657 CCNA_02658: CCNA_02658 - 3-hydroxybutyryl-CoA dehydratase, at 2,810,792 to 2,811,589 _02658 CCNA_02659: CCNA_02659 - two-component receiver domain protein, at 2,811,763 to 2,812,125 _02659 CCNA_02660: CCNA_02660 - pyridoxamine 5'-phosphate oxidase family protein, at 2,812,176 to 2,812,790 _02660 CCNA_02661: CCNA_02661 - M16 family peptidase, at 2,812,862 to 2,815,669 _02661 Position (kb) 2811 2812 2813Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2810.777 kb on + strandat 2810.787 kb on - strandat 2810.801 kb on + strandat 2810.806 kb on + strandat 2810.806 kb on + strandat 2810.806 kb on + strandat 2810.806 kb on + strandat 2810.807 kb on - strandat 2810.807 kb on - strandat 2810.807 kb on - strandat 2810.807 kb on - strandat 2810.807 kb on - strandat 2810.807 kb on - strandat 2810.809 kb on - strandat 2810.809 kb on - strandat 2810.841 kb on - strandat 2810.904 kb on - strand, within CCNA_02658at 2810.946 kb on + strand, within CCNA_02658at 2810.954 kb on - strand, within CCNA_02658at 2810.996 kb on - strand, within CCNA_02658at 2811.000 kb on - strand, within CCNA_02658at 2811.001 kb on - strand, within CCNA_02658at 2811.057 kb on + strand, within CCNA_02658at 2811.065 kb on - strand, within CCNA_02658at 2811.107 kb on + strand, within CCNA_02658at 2811.120 kb on - strand, within CCNA_02658at 2811.127 kb on + strand, within CCNA_02658at 2811.240 kb on - strand, within CCNA_02658at 2811.268 kb on - strand, within CCNA_02658at 2811.268 kb on - strand, within CCNA_02658at 2811.428 kb on + strand, within CCNA_02658at 2811.446 kb on - strand, within CCNA_02658at 2811.495 kb on + strand, within CCNA_02658at 2811.516 kb on + strandat 2811.521 kb on + strandat 2811.529 kb on - strandat 2811.601 kb on + strandat 2811.643 kb on + strandat 2811.643 kb on + strandat 2811.711 kb on + strandat 2811.780 kb on + strandat 2811.780 kb on + strandat 2811.836 kb on - strand, within CCNA_02659at 2811.837 kb on - strand, within CCNA_02659at 2811.847 kb on + strand, within CCNA_02659at 2811.852 kb on + strand, within CCNA_02659at 2811.899 kb on + strand, within CCNA_02659at 2811.899 kb on + strand, within CCNA_02659at 2811.907 kb on - strand, within CCNA_02659at 2811.907 kb on - strand, within CCNA_02659at 2811.907 kb on - strand, within CCNA_02659at 2811.907 kb on - strand, within CCNA_02659at 2811.917 kb on - strand, within CCNA_02659at 2811.932 kb on + strand, within CCNA_02659at 2811.956 kb on + strand, within CCNA_02659at 2811.961 kb on + strand, within CCNA_02659at 2811.969 kb on - strand, within CCNA_02659at 2811.969 kb on - strand, within CCNA_02659at 2811.969 kb on - strand, within CCNA_02659at 2812.001 kb on - strand, within CCNA_02659at 2812.016 kb on + strand, within CCNA_02659at 2812.019 kb on - strand, within CCNA_02659at 2812.028 kb on + strand, within CCNA_02659at 2812.038 kb on + strand, within CCNA_02659at 2812.049 kb on + strand, within CCNA_02659at 2812.050 kb on + strand, within CCNA_02659at 2812.063 kb on + strand, within CCNA_02659at 2812.068 kb on - strand, within CCNA_02659at 2812.086 kb on + strand, within CCNA_02659at 2812.093 kb on + strandat 2812.093 kb on + strandat 2812.093 kb on + strandat 2812.101 kb on - strandat 2812.156 kb on - strandat 2812.156 kb on - strandat 2812.167 kb on - strandat 2812.192 kb on - strandat 2812.209 kb on + strandat 2812.209 kb on + strandat 2812.271 kb on + strand, within CCNA_02660at 2812.279 kb on - strand, within CCNA_02660at 2812.286 kb on + strand, within CCNA_02660at 2812.294 kb on - strand, within CCNA_02660at 2812.294 kb on - strand, within CCNA_02660at 2812.316 kb on - strand, within CCNA_02660at 2812.321 kb on - strand, within CCNA_02660at 2812.324 kb on + strand, within CCNA_02660at 2812.326 kb on + strand, within CCNA_02660at 2812.340 kb on - strand, within CCNA_02660at 2812.340 kb on - strand, within CCNA_02660at 2812.340 kb on - strand, within CCNA_02660at 2812.340 kb on - strand, within CCNA_02660at 2812.340 kb on - strand, within CCNA_02660at 2812.364 kb on - strand, within CCNA_02660at 2812.374 kb on - strand, within CCNA_02660at 2812.393 kb on + strand, within CCNA_02660at 2812.393 kb on + strand, within CCNA_02660at 2812.393 kb on + strand, within CCNA_02660at 2812.393 kb on + strand, within CCNA_02660at 2812.401 kb on - strand, within CCNA_02660at 2812.401 kb on - strand, within CCNA_02660at 2812.519 kb on + strand, within CCNA_02660at 2812.524 kb on + strand, within CCNA_02660at 2812.524 kb on + strand, within CCNA_02660at 2812.532 kb on - strand, within CCNA_02660at 2812.532 kb on - strand, within CCNA_02660at 2812.534 kb on - strand, within CCNA_02660at 2812.545 kb on + strand, within CCNA_02660at 2812.547 kb on + strand, within CCNA_02660at 2812.547 kb on + strand, within CCNA_02660at 2812.547 kb on + strand, within CCNA_02660at 2812.547 kb on + strand, within CCNA_02660at 2812.555 kb on - strand, within CCNA_02660at 2812.610 kb on + strand, within CCNA_02660at 2812.677 kb on + strand, within CCNA_02660at 2812.685 kb on - strand, within CCNA_02660at 2812.707 kb on - strand, within CCNA_02660at 2812.751 kb on - strandat 2812.751 kb on - strandat 2812.787 kb on + strandat 2812.850 kb on - strandat 2812.857 kb on + strandat 2812.857 kb on - strandat 2812.867 kb on - strandat 2812.963 kb on + strandat 2812.963 kb on + strandat 2812.963 kb on + strandat 2812.978 kb on + strandat 2812.996 kb on + strandat 2813.026 kb on - strandat 2813.049 kb on + strandat 2813.067 kb on - strandat 2813.067 kb on - strandat 2813.075 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
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2,810,777 + +0.7
2,810,787 - -0.7
2,810,801 + +0.4
2,810,806 + +1.4
2,810,806 + +1.9
2,810,806 + +1.9
2,810,806 + +2.3
2,810,807 - +0.9
2,810,807 - +0.5
2,810,807 - -1.8
2,810,807 - -0.2
2,810,807 - +0.9
2,810,807 - +0.8
2,810,809 - +1.7
2,810,809 - -0.8
2,810,841 - -0.0
2,810,904 - CCNA_02658 0.14 -0.4
2,810,946 + CCNA_02658 0.19 -2.1
2,810,954 - CCNA_02658 0.20 +1.7
2,810,996 - CCNA_02658 0.26 +1.3
2,811,000 - CCNA_02658 0.26 -2.7
2,811,001 - CCNA_02658 0.26 -1.0
2,811,057 + CCNA_02658 0.33 -1.8
2,811,065 - CCNA_02658 0.34 -0.1
2,811,107 + CCNA_02658 0.39 -1.5
2,811,120 - CCNA_02658 0.41 -0.9
2,811,127 + CCNA_02658 0.42 -0.3
2,811,240 - CCNA_02658 0.56 +1.1
2,811,268 - CCNA_02658 0.60 -0.9
2,811,268 - CCNA_02658 0.60 -0.8
2,811,428 + CCNA_02658 0.80 -0.8
2,811,446 - CCNA_02658 0.82 -0.8
2,811,495 + CCNA_02658 0.88 -1.6
2,811,516 + +0.4
2,811,521 + -1.5
2,811,529 - +0.4
2,811,601 + +0.4
2,811,643 + -0.9
2,811,643 + -1.2
2,811,711 + -0.9
2,811,780 + +0.3
2,811,780 + +1.1
2,811,836 - CCNA_02659 0.20 -1.4
2,811,837 - CCNA_02659 0.20 -2.6
2,811,847 + CCNA_02659 0.23 +0.4
2,811,852 + CCNA_02659 0.25 +0.6
2,811,899 + CCNA_02659 0.37 +0.7
2,811,899 + CCNA_02659 0.37 +1.8
2,811,907 - CCNA_02659 0.40 -2.9
2,811,907 - CCNA_02659 0.40 -0.2
2,811,907 - CCNA_02659 0.40 +0.5
2,811,907 - CCNA_02659 0.40 -1.4
2,811,917 - CCNA_02659 0.42 -2.4
2,811,932 + CCNA_02659 0.47 +0.8
2,811,956 + CCNA_02659 0.53 +1.1
2,811,961 + CCNA_02659 0.55 +0.9
2,811,969 - CCNA_02659 0.57 +0.1
2,811,969 - CCNA_02659 0.57 -1.5
2,811,969 - CCNA_02659 0.57 -0.9
2,812,001 - CCNA_02659 0.66 +0.4
2,812,016 + CCNA_02659 0.70 +0.0
2,812,019 - CCNA_02659 0.71 +1.1
2,812,028 + CCNA_02659 0.73 +1.5
2,812,038 + CCNA_02659 0.76 -0.1
2,812,049 + CCNA_02659 0.79 -2.1
2,812,050 + CCNA_02659 0.79 +0.6
2,812,063 + CCNA_02659 0.83 +0.6
2,812,068 - CCNA_02659 0.84 -0.6
2,812,086 + CCNA_02659 0.89 +0.2
2,812,093 + +0.9
2,812,093 + +0.7
2,812,093 + +0.9
2,812,101 - -0.6
2,812,156 - -1.8
2,812,156 - -0.6
2,812,167 - -0.4
2,812,192 - -0.2
2,812,209 + +1.2
2,812,209 + -0.2
2,812,271 + CCNA_02660 0.15 -1.2
2,812,279 - CCNA_02660 0.17 -2.6
2,812,286 + CCNA_02660 0.18 -0.2
2,812,294 - CCNA_02660 0.19 -0.8
2,812,294 - CCNA_02660 0.19 +0.1
2,812,316 - CCNA_02660 0.23 +0.1
2,812,321 - CCNA_02660 0.24 -0.1
2,812,324 + CCNA_02660 0.24 -2.2
2,812,326 + CCNA_02660 0.24 +0.9
2,812,340 - CCNA_02660 0.27 -0.9
2,812,340 - CCNA_02660 0.27 -0.6
2,812,340 - CCNA_02660 0.27 +1.7
2,812,340 - CCNA_02660 0.27 -2.7
2,812,340 - CCNA_02660 0.27 -0.4
2,812,364 - CCNA_02660 0.31 -1.4
2,812,374 - CCNA_02660 0.32 -1.6
2,812,393 + CCNA_02660 0.35 -0.7
2,812,393 + CCNA_02660 0.35 +1.0
2,812,393 + CCNA_02660 0.35 +0.6
2,812,393 + CCNA_02660 0.35 -0.3
2,812,401 - CCNA_02660 0.37 +0.9
2,812,401 - CCNA_02660 0.37 -1.1
2,812,519 + CCNA_02660 0.56 +0.7
2,812,524 + CCNA_02660 0.57 +0.4
2,812,524 + CCNA_02660 0.57 -0.5
2,812,532 - CCNA_02660 0.58 -0.8
2,812,532 - CCNA_02660 0.58 -1.3
2,812,534 - CCNA_02660 0.58 -1.0
2,812,545 + CCNA_02660 0.60 -1.7
2,812,547 + CCNA_02660 0.60 -0.1
2,812,547 + CCNA_02660 0.60 -1.0
2,812,547 + CCNA_02660 0.60 -0.1
2,812,547 + CCNA_02660 0.60 +2.1
2,812,555 - CCNA_02660 0.62 -2.0
2,812,610 + CCNA_02660 0.71 -0.8
2,812,677 + CCNA_02660 0.81 -0.9
2,812,685 - CCNA_02660 0.83 -1.3
2,812,707 - CCNA_02660 0.86 +0.9
2,812,751 - +0.1
2,812,751 - -0.8
2,812,787 + -1.7
2,812,850 - +0.7
2,812,857 + -0.1
2,812,857 - -1.5
2,812,867 - -1.1
2,812,963 + +0.4
2,812,963 + -1.1
2,812,963 + +0.4
2,812,978 + +1.0
2,812,996 + +1.4
2,813,026 - -0.5
2,813,049 + +1.4
2,813,067 - +0.8
2,813,067 - -0.3
2,813,075 - +0.4

Or see this region's nucleotide sequence