Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00885

Experiment: m-Inositol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00883 and CCNA_00884 are separated by 2 nucleotidesCCNA_00884 and CCNA_00885 overlap by 11 nucleotidesCCNA_00885 and CCNA_00886 are separated by 206 nucleotides CCNA_00883: CCNA_00883 - 3-demethylubiquinone 3-methyltransferase, at 963,045 to 963,803 _00883 CCNA_00884: CCNA_00884 - VapC-like PIN domain ribonuclease toxin, at 963,806 to 964,192 _00884 CCNA_00885: CCNA_00885 - MazE-like antitoxin protein, at 964,182 to 964,730 _00885 CCNA_00886: CCNA_00886 - aspartokinase, at 964,937 to 966,184 _00886 Position (kb) 964 965Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 963.760 kb on + strandat 963.769 kb on + strandat 963.799 kb on + strandat 963.807 kb on - strandat 963.831 kb on + strandat 963.834 kb on - strandat 963.836 kb on + strandat 963.836 kb on + strandat 963.844 kb on - strandat 963.844 kb on - strandat 963.844 kb on - strandat 963.844 kb on - strandat 963.863 kb on + strand, within CCNA_00884at 963.904 kb on - strand, within CCNA_00884at 963.925 kb on + strand, within CCNA_00884at 963.942 kb on + strand, within CCNA_00884at 963.950 kb on - strand, within CCNA_00884at 963.950 kb on - strand, within CCNA_00884at 963.950 kb on - strand, within CCNA_00884at 963.973 kb on + strand, within CCNA_00884at 964.042 kb on + strand, within CCNA_00884at 964.076 kb on - strand, within CCNA_00884at 964.091 kb on + strand, within CCNA_00884at 964.099 kb on - strand, within CCNA_00884at 964.201 kb on - strandat 964.207 kb on - strandat 964.220 kb on - strandat 964.220 kb on - strandat 964.220 kb on - strandat 964.227 kb on + strandat 964.234 kb on + strandat 964.306 kb on - strand, within CCNA_00885at 964.327 kb on + strand, within CCNA_00885at 964.329 kb on - strand, within CCNA_00885at 964.354 kb on + strand, within CCNA_00885at 964.359 kb on + strand, within CCNA_00885at 964.359 kb on + strand, within CCNA_00885at 964.359 kb on + strand, within CCNA_00885at 964.378 kb on + strand, within CCNA_00885at 964.379 kb on - strand, within CCNA_00885at 964.395 kb on + strand, within CCNA_00885at 964.398 kb on - strand, within CCNA_00885at 964.403 kb on - strand, within CCNA_00885at 964.416 kb on + strand, within CCNA_00885at 964.423 kb on + strand, within CCNA_00885at 964.425 kb on - strand, within CCNA_00885at 964.431 kb on - strand, within CCNA_00885at 964.431 kb on - strand, within CCNA_00885at 964.431 kb on - strand, within CCNA_00885at 964.440 kb on + strand, within CCNA_00885at 964.440 kb on + strand, within CCNA_00885at 964.440 kb on + strand, within CCNA_00885at 964.443 kb on - strand, within CCNA_00885at 964.448 kb on - strand, within CCNA_00885at 964.461 kb on + strand, within CCNA_00885at 964.475 kb on + strand, within CCNA_00885at 964.475 kb on + strand, within CCNA_00885at 964.483 kb on - strand, within CCNA_00885at 964.485 kb on - strand, within CCNA_00885at 964.525 kb on + strand, within CCNA_00885at 964.531 kb on + strand, within CCNA_00885at 964.533 kb on - strand, within CCNA_00885at 964.554 kb on - strand, within CCNA_00885at 964.554 kb on - strand, within CCNA_00885at 964.561 kb on - strand, within CCNA_00885at 964.577 kb on + strand, within CCNA_00885at 964.577 kb on + strand, within CCNA_00885at 964.577 kb on + strand, within CCNA_00885at 964.585 kb on - strand, within CCNA_00885at 964.595 kb on - strand, within CCNA_00885at 964.605 kb on - strand, within CCNA_00885at 964.669 kb on - strand, within CCNA_00885at 964.708 kb on - strandat 964.794 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C)
remove
963,760 + +1.4
963,769 + -2.3
963,799 + +2.2
963,807 - -0.8
963,831 + +0.7
963,834 - +0.6
963,836 + -0.8
963,836 + -1.3
963,844 - -1.2
963,844 - +0.0
963,844 - -2.0
963,844 - +0.1
963,863 + CCNA_00884 0.15 -2.6
963,904 - CCNA_00884 0.25 -1.1
963,925 + CCNA_00884 0.31 -1.7
963,942 + CCNA_00884 0.35 -3.1
963,950 - CCNA_00884 0.37 -1.2
963,950 - CCNA_00884 0.37 -0.5
963,950 - CCNA_00884 0.37 +1.1
963,973 + CCNA_00884 0.43 -1.3
964,042 + CCNA_00884 0.61 +0.3
964,076 - CCNA_00884 0.70 -1.2
964,091 + CCNA_00884 0.74 -0.1
964,099 - CCNA_00884 0.76 -1.5
964,201 - +1.2
964,207 - +0.6
964,220 - +1.2
964,220 - +1.5
964,220 - +1.1
964,227 + +0.5
964,234 + -2.0
964,306 - CCNA_00885 0.23 +0.3
964,327 + CCNA_00885 0.26 +0.3
964,329 - CCNA_00885 0.27 +0.9
964,354 + CCNA_00885 0.31 -0.7
964,359 + CCNA_00885 0.32 +0.1
964,359 + CCNA_00885 0.32 +2.7
964,359 + CCNA_00885 0.32 -1.6
964,378 + CCNA_00885 0.36 -2.7
964,379 - CCNA_00885 0.36 +1.4
964,395 + CCNA_00885 0.39 -2.5
964,398 - CCNA_00885 0.39 +1.8
964,403 - CCNA_00885 0.40 +1.5
964,416 + CCNA_00885 0.43 +0.3
964,423 + CCNA_00885 0.44 -0.4
964,425 - CCNA_00885 0.44 +2.0
964,431 - CCNA_00885 0.45 +1.2
964,431 - CCNA_00885 0.45 +2.2
964,431 - CCNA_00885 0.45 +0.9
964,440 + CCNA_00885 0.47 +0.1
964,440 + CCNA_00885 0.47 +0.4
964,440 + CCNA_00885 0.47 -1.0
964,443 - CCNA_00885 0.48 +1.0
964,448 - CCNA_00885 0.48 -0.0
964,461 + CCNA_00885 0.51 -2.0
964,475 + CCNA_00885 0.53 -0.2
964,475 + CCNA_00885 0.53 -2.6
964,483 - CCNA_00885 0.55 +2.1
964,485 - CCNA_00885 0.55 +1.4
964,525 + CCNA_00885 0.62 -0.9
964,531 + CCNA_00885 0.64 -1.3
964,533 - CCNA_00885 0.64 +1.7
964,554 - CCNA_00885 0.68 +0.3
964,554 - CCNA_00885 0.68 +1.8
964,561 - CCNA_00885 0.69 +1.8
964,577 + CCNA_00885 0.72 +0.1
964,577 + CCNA_00885 0.72 -0.2
964,577 + CCNA_00885 0.72 -1.6
964,585 - CCNA_00885 0.73 +1.6
964,595 - CCNA_00885 0.75 +1.8
964,605 - CCNA_00885 0.77 +1.8
964,669 - CCNA_00885 0.89 +1.7
964,708 - +1.7
964,794 - -1.5

Or see this region's nucleotide sequence