Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03000 and BPHYT_RS03005 overlap by 4 nucleotides BPHYT_RS03005 and BPHYT_RS03010 are separated by 39 nucleotides BPHYT_RS03010 and BPHYT_RS03015 are separated by 34 nucleotides
BPHYT_RS03000: BPHYT_RS03000 - acyl-CoA dehydrogenase, at 668,604 to 669,767
_RS03000
BPHYT_RS03005: BPHYT_RS03005 - CoA transferase, at 669,764 to 670,954
_RS03005
BPHYT_RS03010: BPHYT_RS03010 - GntR family transcriptional regulator, at 670,994 to 671,752
_RS03010
BPHYT_RS03015: BPHYT_RS03015 - aldolase, at 671,787 to 672,599
_RS03015
Position (kb) 669
670
671 Strain fitness (log2 ratio) -2
-1
0
1
2 at 668.817 kb on + strand, within BPHYT_RS03000 at 668.817 kb on + strand, within BPHYT_RS03000 at 668.933 kb on + strand, within BPHYT_RS03000 at 668.934 kb on - strand, within BPHYT_RS03000 at 668.937 kb on + strand, within BPHYT_RS03000 at 668.938 kb on - strand, within BPHYT_RS03000 at 669.052 kb on - strand, within BPHYT_RS03000 at 669.224 kb on + strand, within BPHYT_RS03000 at 669.225 kb on - strand, within BPHYT_RS03000 at 669.319 kb on + strand, within BPHYT_RS03000 at 669.406 kb on - strand, within BPHYT_RS03000 at 669.406 kb on - strand, within BPHYT_RS03000 at 669.406 kb on - strand, within BPHYT_RS03000 at 669.532 kb on - strand, within BPHYT_RS03000 at 669.532 kb on - strand, within BPHYT_RS03000 at 669.637 kb on - strand, within BPHYT_RS03000 at 669.654 kb on + strand at 669.655 kb on - strand at 669.693 kb on - strand at 669.693 kb on - strand at 670.095 kb on - strand, within BPHYT_RS03005 at 670.095 kb on - strand, within BPHYT_RS03005 at 670.148 kb on + strand, within BPHYT_RS03005 at 670.190 kb on + strand, within BPHYT_RS03005 at 670.191 kb on - strand, within BPHYT_RS03005 at 670.387 kb on + strand, within BPHYT_RS03005 at 670.388 kb on - strand, within BPHYT_RS03005 at 670.398 kb on - strand, within BPHYT_RS03005 at 670.413 kb on - strand, within BPHYT_RS03005 at 670.484 kb on + strand, within BPHYT_RS03005 at 670.484 kb on + strand, within BPHYT_RS03005 at 670.484 kb on + strand, within BPHYT_RS03005 at 670.953 kb on - strand at 671.033 kb on + strand at 671.033 kb on + strand at 671.285 kb on + strand, within BPHYT_RS03010 at 671.287 kb on + strand, within BPHYT_RS03010 at 671.287 kb on + strand, within BPHYT_RS03010 at 671.450 kb on + strand, within BPHYT_RS03010 at 671.450 kb on + strand, within BPHYT_RS03010 at 671.450 kb on + strand, within BPHYT_RS03010 at 671.450 kb on + strand, within BPHYT_RS03010 at 671.451 kb on - strand, within BPHYT_RS03010 at 671.451 kb on - strand, within BPHYT_RS03010 at 671.451 kb on - strand, within BPHYT_RS03010 at 671.451 kb on - strand, within BPHYT_RS03010 at 671.452 kb on + strand, within BPHYT_RS03010 at 671.452 kb on + strand, within BPHYT_RS03010 at 671.510 kb on + strand, within BPHYT_RS03010 at 671.714 kb on + strand at 671.714 kb on + strand at 671.715 kb on - strand at 671.715 kb on - strand at 671.802 kb on + strand at 671.803 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 668,817 + BPHYT_RS03000 0.18 -0.3 668,817 + BPHYT_RS03000 0.18 +0.2 668,933 + BPHYT_RS03000 0.28 -0.3 668,934 - BPHYT_RS03000 0.28 -1.2 668,937 + BPHYT_RS03000 0.29 +0.6 668,938 - BPHYT_RS03000 0.29 -0.4 669,052 - BPHYT_RS03000 0.38 -0.3 669,224 + BPHYT_RS03000 0.53 -0.1 669,225 - BPHYT_RS03000 0.53 -0.3 669,319 + BPHYT_RS03000 0.61 -0.2 669,406 - BPHYT_RS03000 0.69 -1.7 669,406 - BPHYT_RS03000 0.69 -0.1 669,406 - BPHYT_RS03000 0.69 +0.2 669,532 - BPHYT_RS03000 0.80 -0.9 669,532 - BPHYT_RS03000 0.80 -0.3 669,637 - BPHYT_RS03000 0.89 +0.1 669,654 + -0.4 669,655 - -1.2 669,693 - +0.4 669,693 - -0.3 670,095 - BPHYT_RS03005 0.28 -0.9 670,095 - BPHYT_RS03005 0.28 -0.5 670,148 + BPHYT_RS03005 0.32 +0.0 670,190 + BPHYT_RS03005 0.36 +0.2 670,191 - BPHYT_RS03005 0.36 -0.3 670,387 + BPHYT_RS03005 0.52 -0.3 670,388 - BPHYT_RS03005 0.52 -0.3 670,398 - BPHYT_RS03005 0.53 -0.1 670,413 - BPHYT_RS03005 0.54 -0.9 670,484 + BPHYT_RS03005 0.60 -0.2 670,484 + BPHYT_RS03005 0.60 +0.1 670,484 + BPHYT_RS03005 0.60 -1.1 670,953 - -0.5 671,033 + -0.1 671,033 + -0.2 671,285 + BPHYT_RS03010 0.38 -0.8 671,287 + BPHYT_RS03010 0.39 +1.1 671,287 + BPHYT_RS03010 0.39 +0.7 671,450 + BPHYT_RS03010 0.60 -1.0 671,450 + BPHYT_RS03010 0.60 -2.0 671,450 + BPHYT_RS03010 0.60 +1.2 671,450 + BPHYT_RS03010 0.60 -0.0 671,451 - BPHYT_RS03010 0.60 +0.2 671,451 - BPHYT_RS03010 0.60 -0.4 671,451 - BPHYT_RS03010 0.60 +2.0 671,451 - BPHYT_RS03010 0.60 -1.1 671,452 + BPHYT_RS03010 0.60 -0.6 671,452 + BPHYT_RS03010 0.60 -1.2 671,510 + BPHYT_RS03010 0.68 +0.0 671,714 + +0.1 671,714 + -0.1 671,715 - -1.1 671,715 - +0.4 671,802 + -1.0 671,803 - +0.1
Or see this region's nucleotide sequence