Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS03710 and ABIE51_RS03715 overlap by 11 nucleotides ABIE51_RS03715 and ABIE51_RS03720 are separated by 113 nucleotides ABIE51_RS03720 and ABIE51_RS03725 are separated by 1 nucleotides
ABIE51_RS03710: ABIE51_RS03710 - glycoside hydrolase family 43 protein, at 823,692 to 824,708
_RS03710
ABIE51_RS03715: ABIE51_RS03715 - aldose epimerase, at 824,698 to 825,510
_RS03715
ABIE51_RS03720: ABIE51_RS03720 - flagellar motor stator protein MotA, at 825,624 to 826,478
_RS03720
ABIE51_RS03725: ABIE51_RS03725 - flagellar motor protein MotB, at 826,480 to 827,457
_RS03725
Position (kb) 825
826
827 Strain fitness (log2 ratio) -1
0
1
2 at 824.698 kb on - strand at 824.881 kb on + strand, within ABIE51_RS03715 at 824.881 kb on + strand, within ABIE51_RS03715 at 824.882 kb on - strand, within ABIE51_RS03715 at 825.717 kb on + strand, within ABIE51_RS03720 at 825.717 kb on + strand, within ABIE51_RS03720 at 825.718 kb on - strand, within ABIE51_RS03720 at 825.718 kb on - strand, within ABIE51_RS03720 at 825.831 kb on + strand, within ABIE51_RS03720 at 825.831 kb on + strand, within ABIE51_RS03720 at 825.831 kb on + strand, within ABIE51_RS03720 at 825.832 kb on - strand, within ABIE51_RS03720 at 825.832 kb on - strand, within ABIE51_RS03720 at 825.847 kb on - strand, within ABIE51_RS03720 at 825.847 kb on - strand, within ABIE51_RS03720 at 826.253 kb on - strand, within ABIE51_RS03720 at 826.273 kb on - strand, within ABIE51_RS03720 at 826.377 kb on + strand, within ABIE51_RS03720 at 826.571 kb on - strand at 826.580 kb on + strand, within ABIE51_RS03725 at 826.664 kb on - strand, within ABIE51_RS03725 at 826.664 kb on - strand, within ABIE51_RS03725 at 827.041 kb on + strand, within ABIE51_RS03725 at 827.042 kb on - strand, within ABIE51_RS03725 at 827.106 kb on + strand, within ABIE51_RS03725 at 827.131 kb on + strand, within ABIE51_RS03725 at 827.132 kb on - strand, within ABIE51_RS03725
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 824,698 - -0.7 824,881 + ABIE51_RS03715 0.23 +0.2 824,881 + ABIE51_RS03715 0.23 +0.0 824,882 - ABIE51_RS03715 0.23 -0.9 825,717 + ABIE51_RS03720 0.11 +0.1 825,717 + ABIE51_RS03720 0.11 -0.3 825,718 - ABIE51_RS03720 0.11 +0.4 825,718 - ABIE51_RS03720 0.11 -0.8 825,831 + ABIE51_RS03720 0.24 +0.3 825,831 + ABIE51_RS03720 0.24 -0.5 825,831 + ABIE51_RS03720 0.24 +1.0 825,832 - ABIE51_RS03720 0.24 +0.4 825,832 - ABIE51_RS03720 0.24 -0.5 825,847 - ABIE51_RS03720 0.26 -0.0 825,847 - ABIE51_RS03720 0.26 -0.3 826,253 - ABIE51_RS03720 0.74 -1.7 826,273 - ABIE51_RS03720 0.76 -1.2 826,377 + ABIE51_RS03720 0.88 -0.9 826,571 - -1.6 826,580 + ABIE51_RS03725 0.10 +2.0 826,664 - ABIE51_RS03725 0.19 -0.6 826,664 - ABIE51_RS03725 0.19 +0.1 827,041 + ABIE51_RS03725 0.57 +1.4 827,042 - ABIE51_RS03725 0.57 -1.0 827,106 + ABIE51_RS03725 0.64 -0.4 827,131 + ABIE51_RS03725 0.67 -0.4 827,132 - ABIE51_RS03725 0.67 -0.0
Or see this region's nucleotide sequence