Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS00910

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS00900 and ABIE51_RS00905 are separated by 2 nucleotidesABIE51_RS00905 and ABIE51_RS00910 overlap by 4 nucleotidesABIE51_RS00910 and ABIE51_RS00915 are separated by 23 nucleotidesABIE51_RS00915 and ABIE51_RS00920 are separated by 133 nucleotides ABIE51_RS00900: ABIE51_RS00900 - fluoride efflux transporter CrcB, at 188,943 to 189,323 _RS00900 ABIE51_RS00905: ABIE51_RS00905 - response regulator transcription factor, at 189,326 to 189,958 _RS00905 ABIE51_RS00910: ABIE51_RS00910 - histidine kinase, at 189,955 to 191,185 _RS00910 ABIE51_RS00915: ABIE51_RS00915 - hypothetical protein, at 191,209 to 191,925 _RS00915 ABIE51_RS00920: ABIE51_RS00920 - FAD/NAD(P)-binding protein, at 192,059 to 193,474 _RS00920 Position (kb) 189 190 191 192Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 189.079 kb on - strand, within ABIE51_RS00900at 189.229 kb on - strand, within ABIE51_RS00900at 189.229 kb on - strand, within ABIE51_RS00900at 189.229 kb on - strand, within ABIE51_RS00900at 189.229 kb on - strand, within ABIE51_RS00900at 189.229 kb on - strand, within ABIE51_RS00900at 189.229 kb on - strand, within ABIE51_RS00900at 189.229 kb on - strand, within ABIE51_RS00900at 189.304 kb on + strandat 189.304 kb on + strandat 189.304 kb on + strandat 189.305 kb on - strandat 189.305 kb on - strandat 189.305 kb on - strandat 189.305 kb on - strandat 189.305 kb on - strandat 189.305 kb on - strandat 189.305 kb on - strandat 189.305 kb on - strandat 189.408 kb on + strand, within ABIE51_RS00905at 189.408 kb on + strand, within ABIE51_RS00905at 189.408 kb on + strand, within ABIE51_RS00905at 189.408 kb on + strand, within ABIE51_RS00905at 189.408 kb on + strand, within ABIE51_RS00905at 189.409 kb on - strand, within ABIE51_RS00905at 189.409 kb on - strand, within ABIE51_RS00905at 189.409 kb on - strand, within ABIE51_RS00905at 189.409 kb on - strand, within ABIE51_RS00905at 189.409 kb on - strand, within ABIE51_RS00905at 189.409 kb on - strand, within ABIE51_RS00905at 189.409 kb on - strand, within ABIE51_RS00905at 189.409 kb on - strand, within ABIE51_RS00905at 189.540 kb on + strand, within ABIE51_RS00905at 189.540 kb on + strand, within ABIE51_RS00905at 189.541 kb on - strand, within ABIE51_RS00905at 189.541 kb on - strand, within ABIE51_RS00905at 189.569 kb on - strand, within ABIE51_RS00905at 190.613 kb on + strand, within ABIE51_RS00910at 190.613 kb on + strand, within ABIE51_RS00910at 190.783 kb on + strand, within ABIE51_RS00910at 190.784 kb on - strand, within ABIE51_RS00910at 190.784 kb on - strand, within ABIE51_RS00910at 190.784 kb on - strand, within ABIE51_RS00910at 190.784 kb on - strand, within ABIE51_RS00910at 190.925 kb on + strand, within ABIE51_RS00910at 190.926 kb on - strand, within ABIE51_RS00910at 191.218 kb on + strandat 191.219 kb on - strandat 191.219 kb on - strandat 191.332 kb on + strand, within ABIE51_RS00915at 191.332 kb on + strand, within ABIE51_RS00915at 191.332 kb on + strand, within ABIE51_RS00915at 191.332 kb on + strand, within ABIE51_RS00915at 191.332 kb on + strand, within ABIE51_RS00915at 191.332 kb on + strand, within ABIE51_RS00915at 191.333 kb on - strand, within ABIE51_RS00915at 191.333 kb on - strand, within ABIE51_RS00915at 191.428 kb on + strand, within ABIE51_RS00915at 191.518 kb on + strand, within ABIE51_RS00915at 191.518 kb on + strand, within ABIE51_RS00915at 191.518 kb on + strand, within ABIE51_RS00915at 191.518 kb on + strand, within ABIE51_RS00915at 191.518 kb on + strand, within ABIE51_RS00915at 191.518 kb on + strand, within ABIE51_RS00915at 191.518 kb on + strand, within ABIE51_RS00915at 191.518 kb on + strand, within ABIE51_RS00915at 191.518 kb on + strand, within ABIE51_RS00915at 191.518 kb on + strand, within ABIE51_RS00915at 191.518 kb on + strand, within ABIE51_RS00915at 191.519 kb on - strand, within ABIE51_RS00915at 191.519 kb on - strand, within ABIE51_RS00915at 191.519 kb on - strand, within ABIE51_RS00915at 191.519 kb on - strand, within ABIE51_RS00915at 191.519 kb on - strand, within ABIE51_RS00915at 191.519 kb on - strand, within ABIE51_RS00915at 191.519 kb on - strand, within ABIE51_RS00915at 191.519 kb on - strand, within ABIE51_RS00915at 191.519 kb on - strand, within ABIE51_RS00915at 191.519 kb on - strand, within ABIE51_RS00915at 191.519 kb on - strand, within ABIE51_RS00915at 191.519 kb on - strand, within ABIE51_RS00915at 191.704 kb on + strand, within ABIE51_RS00915at 191.704 kb on + strand, within ABIE51_RS00915at 191.704 kb on + strand, within ABIE51_RS00915at 191.704 kb on + strand, within ABIE51_RS00915at 191.704 kb on + strand, within ABIE51_RS00915at 191.705 kb on - strand, within ABIE51_RS00915at 191.705 kb on - strand, within ABIE51_RS00915at 191.705 kb on - strand, within ABIE51_RS00915at 191.790 kb on + strand, within ABIE51_RS00915at 191.791 kb on - strand, within ABIE51_RS00915at 191.791 kb on - strand, within ABIE51_RS00915at 191.803 kb on + strand, within ABIE51_RS00915at 191.803 kb on + strand, within ABIE51_RS00915at 191.803 kb on + strand, within ABIE51_RS00915at 191.803 kb on + strand, within ABIE51_RS00915at 191.803 kb on + strand, within ABIE51_RS00915at 191.803 kb on + strand, within ABIE51_RS00915at 191.803 kb on + strand, within ABIE51_RS00915at 191.803 kb on + strand, within ABIE51_RS00915at 191.803 kb on + strand, within ABIE51_RS00915at 191.803 kb on + strand, within ABIE51_RS00915at 191.803 kb on + strand, within ABIE51_RS00915at 191.804 kb on - strand, within ABIE51_RS00915at 191.804 kb on - strand, within ABIE51_RS00915at 191.804 kb on - strand, within ABIE51_RS00915at 191.804 kb on - strand, within ABIE51_RS00915at 191.804 kb on - strand, within ABIE51_RS00915at 191.804 kb on - strand, within ABIE51_RS00915at 191.804 kb on - strand, within ABIE51_RS00915at 191.804 kb on - strand, within ABIE51_RS00915at 191.804 kb on - strand, within ABIE51_RS00915at 191.804 kb on - strand, within ABIE51_RS00915at 191.804 kb on - strand, within ABIE51_RS00915at 191.804 kb on - strand, within ABIE51_RS00915at 191.894 kb on + strandat 191.895 kb on - strandat 191.895 kb on - strandat 191.895 kb on - strandat 191.945 kb on + strandat 191.945 kb on + strandat 191.946 kb on - strandat 191.946 kb on - strandat 191.946 kb on - strandat 191.999 kb on + strandat 192.000 kb on - strandat 192.000 kb on - strandat 192.023 kb on + strandat 192.023 kb on + strandat 192.023 kb on + strandat 192.023 kb on + strandat 192.024 kb on - strandat 192.024 kb on - strandat 192.029 kb on + strandat 192.030 kb on - strandat 192.030 kb on - strandat 192.030 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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189,079 - ABIE51_RS00900 0.36 +1.3
189,229 - ABIE51_RS00900 0.75 +1.0
189,229 - ABIE51_RS00900 0.75 +0.9
189,229 - ABIE51_RS00900 0.75 +1.1
189,229 - ABIE51_RS00900 0.75 +0.6
189,229 - ABIE51_RS00900 0.75 +1.8
189,229 - ABIE51_RS00900 0.75 +1.4
189,229 - ABIE51_RS00900 0.75 +0.3
189,304 + +0.3
189,304 + -1.1
189,304 + +0.2
189,305 - -1.4
189,305 - +0.8
189,305 - +0.4
189,305 - -0.8
189,305 - +0.5
189,305 - +1.6
189,305 - -0.6
189,305 - +0.3
189,408 + ABIE51_RS00905 0.13 -3.0
189,408 + ABIE51_RS00905 0.13 +0.8
189,408 + ABIE51_RS00905 0.13 +1.7
189,408 + ABIE51_RS00905 0.13 -0.4
189,408 + ABIE51_RS00905 0.13 +0.3
189,409 - ABIE51_RS00905 0.13 -0.6
189,409 - ABIE51_RS00905 0.13 -1.0
189,409 - ABIE51_RS00905 0.13 -1.9
189,409 - ABIE51_RS00905 0.13 +0.2
189,409 - ABIE51_RS00905 0.13 +0.5
189,409 - ABIE51_RS00905 0.13 -0.1
189,409 - ABIE51_RS00905 0.13 +0.5
189,409 - ABIE51_RS00905 0.13 -0.8
189,540 + ABIE51_RS00905 0.34 +0.2
189,540 + ABIE51_RS00905 0.34 +0.0
189,541 - ABIE51_RS00905 0.34 +0.6
189,541 - ABIE51_RS00905 0.34 -1.2
189,569 - ABIE51_RS00905 0.38 -0.0
190,613 + ABIE51_RS00910 0.53 -1.4
190,613 + ABIE51_RS00910 0.53 -0.2
190,783 + ABIE51_RS00910 0.67 +0.0
190,784 - ABIE51_RS00910 0.67 +1.0
190,784 - ABIE51_RS00910 0.67 -0.2
190,784 - ABIE51_RS00910 0.67 -1.2
190,784 - ABIE51_RS00910 0.67 -0.4
190,925 + ABIE51_RS00910 0.79 -0.2
190,926 - ABIE51_RS00910 0.79 -1.3
191,218 + -0.5
191,219 - +0.2
191,219 - -1.6
191,332 + ABIE51_RS00915 0.17 +1.1
191,332 + ABIE51_RS00915 0.17 -0.7
191,332 + ABIE51_RS00915 0.17 -0.7
191,332 + ABIE51_RS00915 0.17 -1.3
191,332 + ABIE51_RS00915 0.17 +1.5
191,332 + ABIE51_RS00915 0.17 -0.7
191,333 - ABIE51_RS00915 0.17 +0.4
191,333 - ABIE51_RS00915 0.17 +3.1
191,428 + ABIE51_RS00915 0.31 -1.3
191,518 + ABIE51_RS00915 0.43 +0.0
191,518 + ABIE51_RS00915 0.43 -0.9
191,518 + ABIE51_RS00915 0.43 +0.3
191,518 + ABIE51_RS00915 0.43 +0.1
191,518 + ABIE51_RS00915 0.43 -0.7
191,518 + ABIE51_RS00915 0.43 -1.1
191,518 + ABIE51_RS00915 0.43 -3.1
191,518 + ABIE51_RS00915 0.43 -0.9
191,518 + ABIE51_RS00915 0.43 +0.0
191,518 + ABIE51_RS00915 0.43 -0.0
191,518 + ABIE51_RS00915 0.43 +0.9
191,519 - ABIE51_RS00915 0.43 -1.1
191,519 - ABIE51_RS00915 0.43 -1.1
191,519 - ABIE51_RS00915 0.43 -0.9
191,519 - ABIE51_RS00915 0.43 -1.8
191,519 - ABIE51_RS00915 0.43 +0.2
191,519 - ABIE51_RS00915 0.43 +0.2
191,519 - ABIE51_RS00915 0.43 +0.4
191,519 - ABIE51_RS00915 0.43 -0.3
191,519 - ABIE51_RS00915 0.43 -1.2
191,519 - ABIE51_RS00915 0.43 -0.1
191,519 - ABIE51_RS00915 0.43 +0.7
191,519 - ABIE51_RS00915 0.43 -1.2
191,704 + ABIE51_RS00915 0.69 +1.0
191,704 + ABIE51_RS00915 0.69 -1.7
191,704 + ABIE51_RS00915 0.69 -0.6
191,704 + ABIE51_RS00915 0.69 +0.6
191,704 + ABIE51_RS00915 0.69 +1.1
191,705 - ABIE51_RS00915 0.69 +0.1
191,705 - ABIE51_RS00915 0.69 -2.3
191,705 - ABIE51_RS00915 0.69 -0.3
191,790 + ABIE51_RS00915 0.81 -0.1
191,791 - ABIE51_RS00915 0.81 -1.0
191,791 - ABIE51_RS00915 0.81 -1.0
191,803 + ABIE51_RS00915 0.83 -0.2
191,803 + ABIE51_RS00915 0.83 +0.3
191,803 + ABIE51_RS00915 0.83 -0.8
191,803 + ABIE51_RS00915 0.83 -0.1
191,803 + ABIE51_RS00915 0.83 +0.3
191,803 + ABIE51_RS00915 0.83 -0.1
191,803 + ABIE51_RS00915 0.83 -0.1
191,803 + ABIE51_RS00915 0.83 -0.6
191,803 + ABIE51_RS00915 0.83 +0.5
191,803 + ABIE51_RS00915 0.83 -2.4
191,803 + ABIE51_RS00915 0.83 +0.4
191,804 - ABIE51_RS00915 0.83 -1.5
191,804 - ABIE51_RS00915 0.83 -0.6
191,804 - ABIE51_RS00915 0.83 -0.2
191,804 - ABIE51_RS00915 0.83 +0.3
191,804 - ABIE51_RS00915 0.83 +0.4
191,804 - ABIE51_RS00915 0.83 -0.9
191,804 - ABIE51_RS00915 0.83 +0.1
191,804 - ABIE51_RS00915 0.83 -0.6
191,804 - ABIE51_RS00915 0.83 +1.5
191,804 - ABIE51_RS00915 0.83 -0.2
191,804 - ABIE51_RS00915 0.83 -1.2
191,804 - ABIE51_RS00915 0.83 +2.3
191,894 + -0.9
191,895 - -2.8
191,895 - -0.5
191,895 - +1.4
191,945 + -0.1
191,945 + +0.4
191,946 - +2.1
191,946 - +1.2
191,946 - +0.1
191,999 + +1.0
192,000 - +1.1
192,000 - -0.7
192,023 + -0.8
192,023 + +0.9
192,023 + +0.6
192,023 + +0.0
192,024 - -0.5
192,024 - -1.0
192,029 + -0.7
192,030 - -2.4
192,030 - +1.8
192,030 - +1.2

Or see this region's nucleotide sequence