Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS00685 and ABIE51_RS00690 are separated by 6 nucleotides ABIE51_RS00690 and ABIE51_RS00695 overlap by 1 nucleotides ABIE51_RS00695 and ABIE51_RS00700 are separated by 26 nucleotides
ABIE51_RS00685: ABIE51_RS00685 - winged helix-turn-helix domain-containing protein, at 142,559 to 142,906
_RS00685
ABIE51_RS00690: ABIE51_RS00690 - 2-dehydropantoate 2-reductase, at 142,913 to 143,854
_RS00690
ABIE51_RS00695: ABIE51_RS00695 - ABC transporter permease, at 143,854 to 144,630
_RS00695
ABIE51_RS00700: ABIE51_RS00700 - ABC transporter ATP-binding protein, at 144,657 to 145,664
_RS00700
Position (kb) 143
144
145 Strain fitness (log2 ratio) -2
-1
0
1
2 at 142.854 kb on - strand, within ABIE51_RS00685 at 142.854 kb on - strand, within ABIE51_RS00685 at 142.904 kb on + strand at 142.938 kb on + strand at 142.938 kb on + strand at 142.938 kb on + strand at 142.938 kb on + strand at 142.939 kb on - strand at 143.520 kb on + strand, within ABIE51_RS00690 at 143.521 kb on - strand, within ABIE51_RS00690 at 143.521 kb on - strand, within ABIE51_RS00690 at 143.607 kb on + strand, within ABIE51_RS00690 at 143.608 kb on - strand, within ABIE51_RS00690 at 143.814 kb on + strand at 143.814 kb on + strand at 143.999 kb on + strand, within ABIE51_RS00695 at 144.000 kb on - strand, within ABIE51_RS00695 at 144.000 kb on - strand, within ABIE51_RS00695 at 144.060 kb on - strand, within ABIE51_RS00695 at 144.060 kb on - strand, within ABIE51_RS00695 at 144.137 kb on + strand, within ABIE51_RS00695 at 144.452 kb on + strand, within ABIE51_RS00695 at 144.452 kb on + strand, within ABIE51_RS00695 at 144.512 kb on + strand, within ABIE51_RS00695 at 144.513 kb on - strand, within ABIE51_RS00695 at 144.513 kb on - strand, within ABIE51_RS00695 at 144.752 kb on + strand at 145.033 kb on + strand, within ABIE51_RS00700 at 145.301 kb on - strand, within ABIE51_RS00700 at 145.313 kb on - strand, within ABIE51_RS00700 at 145.313 kb on - strand, within ABIE51_RS00700 at 145.576 kb on + strand at 145.576 kb on + strand at 145.576 kb on + strand at 145.576 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 142,854 - ABIE51_RS00685 0.85 -0.4 142,854 - ABIE51_RS00685 0.85 +0.6 142,904 + +1.5 142,938 + +0.9 142,938 + +1.1 142,938 + -0.5 142,938 + +0.2 142,939 - +1.2 143,520 + ABIE51_RS00690 0.64 +0.2 143,521 - ABIE51_RS00690 0.65 -0.4 143,521 - ABIE51_RS00690 0.65 +0.6 143,607 + ABIE51_RS00690 0.74 -0.4 143,608 - ABIE51_RS00690 0.74 +0.3 143,814 + -0.4 143,814 + +0.2 143,999 + ABIE51_RS00695 0.19 +0.3 144,000 - ABIE51_RS00695 0.19 +1.5 144,000 - ABIE51_RS00695 0.19 +0.3 144,060 - ABIE51_RS00695 0.27 +2.4 144,060 - ABIE51_RS00695 0.27 -0.5 144,137 + ABIE51_RS00695 0.36 +0.6 144,452 + ABIE51_RS00695 0.77 +0.1 144,452 + ABIE51_RS00695 0.77 -0.5 144,512 + ABIE51_RS00695 0.85 +0.8 144,513 - ABIE51_RS00695 0.85 -0.3 144,513 - ABIE51_RS00695 0.85 -1.9 144,752 + -1.0 145,033 + ABIE51_RS00700 0.37 -0.9 145,301 - ABIE51_RS00700 0.64 +2.1 145,313 - ABIE51_RS00700 0.65 -0.7 145,313 - ABIE51_RS00700 0.65 +1.1 145,576 + +1.2 145,576 + -0.8 145,576 + -1.5 145,576 + +1.2
Or see this region's nucleotide sequence