Strain Fitness in Sinorhizobium meliloti 1021 around SMc01360

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01361 and SMc01360 overlap by 4 nucleotidesSMc01360 and SMc01359 are separated by 142 nucleotides SMc01361: SMc01361 - dihydroorotase, at 1,421,683 to 1,422,975 SMc01361 SMc01360: SMc01360 - aspartate carbamoyltransferase catalytic subunit, at 1,422,972 to 1,423,913 SMc01360 SMc01359: SMc01359 - oxidoreductase, at 1,424,056 to 1,425,708 SMc01359 Position (kb) 1422 1423 1424Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1422.055 kb on - strand, within SMc01361at 1422.272 kb on + strand, within SMc01361at 1422.272 kb on + strand, within SMc01361at 1422.453 kb on - strand, within SMc01361at 1422.842 kb on - strand, within SMc01361at 1422.842 kb on - strand, within SMc01361at 1422.879 kb on + strandat 1423.181 kb on - strand, within SMc01360at 1423.181 kb on - strand, within SMc01360at 1423.184 kb on - strand, within SMc01360at 1423.184 kb on - strand, within SMc01360at 1423.184 kb on - strand, within SMc01360at 1423.193 kb on - strand, within SMc01360at 1424.044 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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1,422,055 - SMc01361 0.29 -4.2
1,422,272 + SMc01361 0.46 -2.6
1,422,272 + SMc01361 0.46 -3.4
1,422,453 - SMc01361 0.60 -3.5
1,422,842 - SMc01361 0.90 -3.5
1,422,842 - SMc01361 0.90 -2.6
1,422,879 + -5.7
1,423,181 - SMc01360 0.22 -3.2
1,423,181 - SMc01360 0.22 -5.5
1,423,184 - SMc01360 0.23 -3.7
1,423,184 - SMc01360 0.23 -1.9
1,423,184 - SMc01360 0.23 -1.7
1,423,193 - SMc01360 0.23 -2.8
1,424,044 + -2.0

Or see this region's nucleotide sequence