Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20715 and SM_b20716 are separated by 154 nucleotides SM_b20716 and SM_b20717 are separated by 88 nucleotides
SM_b20715: SM_b20715 - LysR family transcriptional regulator, at 1,518,496 to 1,519,401
_b20715
SM_b20716: SM_b20716 - hypothetical protein, at 1,519,556 to 1,520,452
_b20716
SM_b20717: SM_b20717 - LacI family transcriptional regulator, at 1,520,541 to 1,521,566
_b20717
Position (kb)
1519
1520
1521 Strain fitness (log2 ratio)
-1
0
1 at 1518.558 kb on + strand at 1518.558 kb on + strand at 1518.559 kb on - strand at 1518.559 kb on - strand at 1518.559 kb on - strand at 1518.559 kb on - strand at 1518.602 kb on + strand, within SM_b20715 at 1518.603 kb on - strand, within SM_b20715 at 1518.682 kb on + strand, within SM_b20715 at 1518.682 kb on + strand, within SM_b20715 at 1518.683 kb on - strand, within SM_b20715 at 1518.715 kb on - strand, within SM_b20715 at 1518.715 kb on - strand, within SM_b20715 at 1518.740 kb on - strand, within SM_b20715 at 1518.740 kb on - strand, within SM_b20715 at 1518.947 kb on - strand, within SM_b20715 at 1518.947 kb on - strand, within SM_b20715 at 1519.191 kb on + strand, within SM_b20715 at 1519.192 kb on - strand, within SM_b20715 at 1519.254 kb on + strand, within SM_b20715 at 1519.427 kb on - strand at 1519.519 kb on + strand at 1519.519 kb on + strand at 1519.667 kb on + strand, within SM_b20716 at 1519.719 kb on + strand, within SM_b20716 at 1519.719 kb on + strand, within SM_b20716 at 1519.896 kb on + strand, within SM_b20716 at 1519.897 kb on - strand, within SM_b20716 at 1519.932 kb on + strand, within SM_b20716 at 1520.042 kb on + strand, within SM_b20716 at 1520.212 kb on + strand, within SM_b20716 at 1520.279 kb on + strand, within SM_b20716 at 1520.279 kb on + strand, within SM_b20716 at 1520.330 kb on + strand, within SM_b20716 at 1520.330 kb on + strand, within SM_b20716 at 1520.331 kb on - strand, within SM_b20716 at 1520.331 kb on - strand, within SM_b20716 at 1520.331 kb on - strand, within SM_b20716 at 1520.348 kb on - strand, within SM_b20716 at 1520.403 kb on + strand at 1520.469 kb on + strand at 1520.490 kb on + strand at 1520.495 kb on + strand at 1520.495 kb on + strand at 1520.495 kb on + strand at 1520.542 kb on + strand at 1520.766 kb on + strand, within SM_b20717 at 1520.767 kb on - strand, within SM_b20717 at 1520.773 kb on + strand, within SM_b20717 at 1520.774 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.981 kb on + strand, within SM_b20717 at 1520.981 kb on + strand, within SM_b20717 at 1520.983 kb on + strand, within SM_b20717 at 1521.091 kb on + strand, within SM_b20717 at 1521.091 kb on + strand, within SM_b20717 at 1521.091 kb on + strand, within SM_b20717 at 1521.091 kb on + strand, within SM_b20717 at 1521.091 kb on + strand, within SM_b20717 at 1521.092 kb on - strand, within SM_b20717 at 1521.092 kb on - strand, within SM_b20717 at 1521.092 kb on - strand, within SM_b20717 at 1521.092 kb on - strand, within SM_b20717 at 1521.092 kb on - strand, within SM_b20717 at 1521.326 kb on + strand, within SM_b20717 at 1521.326 kb on + strand, within SM_b20717 at 1521.327 kb on - strand, within SM_b20717 at 1521.418 kb on + strand, within SM_b20717
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 1,518,558 + -0.1 1,518,558 + +1.0 1,518,559 - -0.4 1,518,559 - +0.0 1,518,559 - -0.3 1,518,559 - +0.2 1,518,602 + SM_b20715 0.12 +1.4 1,518,603 - SM_b20715 0.12 +1.0 1,518,682 + SM_b20715 0.21 -0.4 1,518,682 + SM_b20715 0.21 +1.3 1,518,683 - SM_b20715 0.21 +0.2 1,518,715 - SM_b20715 0.24 -0.6 1,518,715 - SM_b20715 0.24 +0.7 1,518,740 - SM_b20715 0.27 +0.0 1,518,740 - SM_b20715 0.27 +0.1 1,518,947 - SM_b20715 0.50 -0.3 1,518,947 - SM_b20715 0.50 +0.2 1,519,191 + SM_b20715 0.77 +0.9 1,519,192 - SM_b20715 0.77 -0.5 1,519,254 + SM_b20715 0.84 -0.1 1,519,427 - +0.1 1,519,519 + +0.1 1,519,519 + -0.2 1,519,667 + SM_b20716 0.12 +0.0 1,519,719 + SM_b20716 0.18 -0.1 1,519,719 + SM_b20716 0.18 +0.8 1,519,896 + SM_b20716 0.38 -0.2 1,519,897 - SM_b20716 0.38 -0.4 1,519,932 + SM_b20716 0.42 -0.0 1,520,042 + SM_b20716 0.54 +0.0 1,520,212 + SM_b20716 0.73 -1.0 1,520,279 + SM_b20716 0.81 +0.2 1,520,279 + SM_b20716 0.81 -0.4 1,520,330 + SM_b20716 0.86 -0.2 1,520,330 + SM_b20716 0.86 -0.7 1,520,331 - SM_b20716 0.86 -0.2 1,520,331 - SM_b20716 0.86 +0.2 1,520,331 - SM_b20716 0.86 -0.3 1,520,348 - SM_b20716 0.88 -1.0 1,520,403 + +0.9 1,520,469 + +0.6 1,520,490 + -0.0 1,520,495 + -0.2 1,520,495 + -0.1 1,520,495 + +0.1 1,520,542 + -0.2 1,520,766 + SM_b20717 0.22 -0.8 1,520,767 - SM_b20717 0.22 +0.1 1,520,773 + SM_b20717 0.23 +0.1 1,520,774 - SM_b20717 0.23 +0.3 1,520,922 - SM_b20717 0.37 +1.0 1,520,922 - SM_b20717 0.37 -1.5 1,520,922 - SM_b20717 0.37 +0.1 1,520,922 - SM_b20717 0.37 +0.3 1,520,922 - SM_b20717 0.37 +0.7 1,520,922 - SM_b20717 0.37 -0.6 1,520,981 + SM_b20717 0.43 +0.8 1,520,981 + SM_b20717 0.43 +0.3 1,520,983 + SM_b20717 0.43 -0.1 1,521,091 + SM_b20717 0.54 +0.0 1,521,091 + SM_b20717 0.54 +0.4 1,521,091 + SM_b20717 0.54 +0.6 1,521,091 + SM_b20717 0.54 -0.7 1,521,091 + SM_b20717 0.54 -1.6 1,521,092 - SM_b20717 0.54 +0.4 1,521,092 - SM_b20717 0.54 -0.2 1,521,092 - SM_b20717 0.54 -0.7 1,521,092 - SM_b20717 0.54 -0.5 1,521,092 - SM_b20717 0.54 +0.2 1,521,326 + SM_b20717 0.77 -0.4 1,521,326 + SM_b20717 0.77 +0.4 1,521,327 - SM_b20717 0.77 -0.0 1,521,418 + SM_b20717 0.85 -0.9
Or see this region's nucleotide sequence