Experiment: R2A with Zinc 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS36820 and RR42_RS36825 are separated by 156 nucleotides RR42_RS36825 and RR42_RS36830 are separated by 7 nucleotides RR42_RS36830 and RR42_RS36835 are separated by 57 nucleotides
RR42_RS36820: RR42_RS36820 - poly(3-hydroxybutyrate) depolymerase, at 3,713,263 to 3,714,372
_RS36820
RR42_RS36825: RR42_RS36825 - membrane protein, at 3,714,529 to 3,715,284
_RS36825
RR42_RS36830: RR42_RS36830 - antibiotic biosynthesis monooxygenase, at 3,715,292 to 3,715,666
_RS36830
RR42_RS36835: RR42_RS36835 - cytochrome P450, at 3,715,724 to 3,716,848
_RS36835
Position (kb)
3715
3716 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3714.333 kb on + strand at 3714.482 kb on + strand at 3714.483 kb on - strand at 3714.483 kb on - strand at 3714.483 kb on - strand at 3714.807 kb on + strand, within RR42_RS36825 at 3714.808 kb on - strand, within RR42_RS36825 at 3714.809 kb on + strand, within RR42_RS36825 at 3714.809 kb on + strand, within RR42_RS36825 at 3714.809 kb on + strand, within RR42_RS36825 at 3714.810 kb on - strand, within RR42_RS36825 at 3714.810 kb on - strand, within RR42_RS36825 at 3714.810 kb on - strand, within RR42_RS36825 at 3714.944 kb on + strand, within RR42_RS36825 at 3714.944 kb on + strand, within RR42_RS36825 at 3714.945 kb on - strand, within RR42_RS36825 at 3714.945 kb on - strand, within RR42_RS36825 at 3714.945 kb on - strand, within RR42_RS36825 at 3715.111 kb on + strand, within RR42_RS36825 at 3715.188 kb on + strand, within RR42_RS36825 at 3715.239 kb on + strand at 3715.377 kb on + strand, within RR42_RS36830 at 3715.561 kb on + strand, within RR42_RS36830 at 3715.562 kb on - strand, within RR42_RS36830 at 3715.562 kb on - strand, within RR42_RS36830 at 3715.614 kb on + strand, within RR42_RS36830 at 3715.614 kb on + strand, within RR42_RS36830 at 3715.614 kb on + strand, within RR42_RS36830 at 3715.614 kb on + strand, within RR42_RS36830 at 3715.614 kb on + strand, within RR42_RS36830 at 3715.614 kb on + strand, within RR42_RS36830 at 3715.614 kb on + strand, within RR42_RS36830 at 3715.614 kb on + strand, within RR42_RS36830 at 3715.615 kb on - strand, within RR42_RS36830 at 3715.615 kb on - strand, within RR42_RS36830 at 3715.615 kb on - strand, within RR42_RS36830 at 3715.615 kb on - strand, within RR42_RS36830 at 3715.615 kb on - strand, within RR42_RS36830 at 3716.092 kb on + strand, within RR42_RS36835 at 3716.349 kb on - strand, within RR42_RS36835
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Zinc 0.1 mM remove 3,714,333 + -0.9 3,714,482 + -0.3 3,714,483 - -0.9 3,714,483 - +0.0 3,714,483 - +0.8 3,714,807 + RR42_RS36825 0.37 +0.4 3,714,808 - RR42_RS36825 0.37 +0.7 3,714,809 + RR42_RS36825 0.37 +0.4 3,714,809 + RR42_RS36825 0.37 -0.0 3,714,809 + RR42_RS36825 0.37 -0.1 3,714,810 - RR42_RS36825 0.37 +0.1 3,714,810 - RR42_RS36825 0.37 +0.1 3,714,810 - RR42_RS36825 0.37 +0.7 3,714,944 + RR42_RS36825 0.55 +1.2 3,714,944 + RR42_RS36825 0.55 -0.7 3,714,945 - RR42_RS36825 0.55 +0.5 3,714,945 - RR42_RS36825 0.55 -0.3 3,714,945 - RR42_RS36825 0.55 +2.0 3,715,111 + RR42_RS36825 0.77 +1.4 3,715,188 + RR42_RS36825 0.87 +0.7 3,715,239 + -1.3 3,715,377 + RR42_RS36830 0.23 +0.6 3,715,561 + RR42_RS36830 0.72 -1.7 3,715,562 - RR42_RS36830 0.72 -1.3 3,715,562 - RR42_RS36830 0.72 +0.2 3,715,614 + RR42_RS36830 0.86 -0.9 3,715,614 + RR42_RS36830 0.86 +0.8 3,715,614 + RR42_RS36830 0.86 -2.3 3,715,614 + RR42_RS36830 0.86 -0.0 3,715,614 + RR42_RS36830 0.86 +1.2 3,715,614 + RR42_RS36830 0.86 -0.3 3,715,614 + RR42_RS36830 0.86 +0.8 3,715,614 + RR42_RS36830 0.86 +0.7 3,715,615 - RR42_RS36830 0.86 +0.0 3,715,615 - RR42_RS36830 0.86 +0.5 3,715,615 - RR42_RS36830 0.86 -0.4 3,715,615 - RR42_RS36830 0.86 +1.0 3,715,615 - RR42_RS36830 0.86 +0.8 3,716,092 + RR42_RS36835 0.33 -0.8 3,716,349 - RR42_RS36835 0.56 +0.7
Or see this region's nucleotide sequence