Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33915

Experiment: R2A with Zinc 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS33910 and RR42_RS33915 are separated by 41 nucleotidesRR42_RS33915 and RR42_RS33920 are separated by 49 nucleotides RR42_RS33910: RR42_RS33910 - LysR family transcriptional regulator, at 3,036,137 to 3,037,030 _RS33910 RR42_RS33915: RR42_RS33915 - DNA-binding protein, at 3,037,072 to 3,037,398 _RS33915 RR42_RS33920: RR42_RS33920 - LysR family transcriptional regulator, at 3,037,448 to 3,038,350 _RS33920 Position (kb) 3037 3038Strain fitness (log2 ratio) -2 -1 0 1at 3036.164 kb on + strandat 3036.165 kb on - strandat 3036.165 kb on - strandat 3036.335 kb on + strand, within RR42_RS33910at 3036.336 kb on - strand, within RR42_RS33910at 3036.629 kb on + strand, within RR42_RS33910at 3036.630 kb on - strand, within RR42_RS33910at 3036.952 kb on + strandat 3036.953 kb on - strandat 3036.972 kb on - strandat 3036.972 kb on - strandat 3036.975 kb on + strandat 3036.976 kb on - strandat 3037.028 kb on + strandat 3037.166 kb on + strand, within RR42_RS33915at 3037.319 kb on + strand, within RR42_RS33915at 3037.319 kb on + strand, within RR42_RS33915at 3037.320 kb on - strand, within RR42_RS33915at 3037.320 kb on - strand, within RR42_RS33915at 3037.320 kb on - strand, within RR42_RS33915at 3037.320 kb on - strand, within RR42_RS33915at 3037.320 kb on - strand, within RR42_RS33915at 3037.329 kb on - strand, within RR42_RS33915at 3037.383 kb on + strandat 3037.386 kb on + strandat 3037.386 kb on + strandat 3037.386 kb on + strandat 3037.386 kb on + strandat 3037.387 kb on - strandat 3037.449 kb on + strandat 3037.450 kb on - strandat 3037.589 kb on + strand, within RR42_RS33920at 3037.839 kb on + strand, within RR42_RS33920at 3037.948 kb on + strand, within RR42_RS33920at 3037.949 kb on - strand, within RR42_RS33920at 3037.949 kb on - strand, within RR42_RS33920at 3038.321 kb on + strandat 3038.321 kb on + strandat 3038.321 kb on + strandat 3038.321 kb on + strandat 3038.322 kb on - strandat 3038.322 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Zinc 0.1 mM
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3,036,164 + +0.9
3,036,165 - -0.5
3,036,165 - +0.3
3,036,335 + RR42_RS33910 0.22 +0.9
3,036,336 - RR42_RS33910 0.22 -0.1
3,036,629 + RR42_RS33910 0.55 -1.6
3,036,630 - RR42_RS33910 0.55 -0.7
3,036,952 + +0.5
3,036,953 - +1.7
3,036,972 - -0.3
3,036,972 - -2.4
3,036,975 + -0.6
3,036,976 - +1.3
3,037,028 + -0.8
3,037,166 + RR42_RS33915 0.29 +0.0
3,037,319 + RR42_RS33915 0.76 +1.2
3,037,319 + RR42_RS33915 0.76 -0.6
3,037,320 - RR42_RS33915 0.76 -0.2
3,037,320 - RR42_RS33915 0.76 +0.2
3,037,320 - RR42_RS33915 0.76 +0.4
3,037,320 - RR42_RS33915 0.76 +0.3
3,037,320 - RR42_RS33915 0.76 +0.4
3,037,329 - RR42_RS33915 0.79 -0.3
3,037,383 + +0.8
3,037,386 + +1.4
3,037,386 + -1.8
3,037,386 + -2.2
3,037,386 + -1.2
3,037,387 - -0.0
3,037,449 + -1.1
3,037,450 - +0.4
3,037,589 + RR42_RS33920 0.16 -1.0
3,037,839 + RR42_RS33920 0.43 -0.4
3,037,948 + RR42_RS33920 0.55 -0.1
3,037,949 - RR42_RS33920 0.55 -0.3
3,037,949 - RR42_RS33920 0.55 -0.1
3,038,321 + +1.0
3,038,321 + +0.5
3,038,321 + +0.6
3,038,321 + -0.2
3,038,322 - +0.9
3,038,322 - +1.0

Or see this region's nucleotide sequence