Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26020

Experiment: R2A with Zinc 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26015 and RR42_RS26020 are separated by 260 nucleotidesRR42_RS26020 and RR42_RS26025 are separated by 345 nucleotides RR42_RS26015: RR42_RS26015 - hypothetical protein, at 1,181,931 to 1,183,433 _RS26015 RR42_RS26020: RR42_RS26020 - hydrolase, at 1,183,694 to 1,184,539 _RS26020 RR42_RS26025: RR42_RS26025 - ornithine decarboxylase, at 1,184,885 to 1,187,578 _RS26025 Position (kb) 1183 1184 1185Strain fitness (log2 ratio) -2 -1 0 1 2at 1182.730 kb on + strand, within RR42_RS26015at 1182.730 kb on + strand, within RR42_RS26015at 1182.865 kb on + strand, within RR42_RS26015at 1182.865 kb on + strand, within RR42_RS26015at 1182.866 kb on - strand, within RR42_RS26015at 1182.866 kb on - strand, within RR42_RS26015at 1182.866 kb on - strand, within RR42_RS26015at 1183.171 kb on + strand, within RR42_RS26015at 1183.171 kb on + strand, within RR42_RS26015at 1183.172 kb on - strand, within RR42_RS26015at 1183.172 kb on - strand, within RR42_RS26015at 1183.231 kb on + strand, within RR42_RS26015at 1183.232 kb on - strand, within RR42_RS26015at 1183.258 kb on - strand, within RR42_RS26015at 1183.306 kb on - strandat 1183.356 kb on + strandat 1183.467 kb on + strandat 1183.469 kb on + strandat 1183.470 kb on - strandat 1183.470 kb on - strandat 1183.491 kb on + strandat 1183.539 kb on + strandat 1183.613 kb on + strandat 1183.669 kb on + strandat 1183.669 kb on + strandat 1183.769 kb on + strandat 1183.910 kb on + strand, within RR42_RS26020at 1183.910 kb on + strand, within RR42_RS26020at 1183.911 kb on - strand, within RR42_RS26020at 1183.911 kb on - strand, within RR42_RS26020at 1183.911 kb on - strand, within RR42_RS26020at 1184.120 kb on + strand, within RR42_RS26020at 1184.121 kb on - strand, within RR42_RS26020at 1184.273 kb on - strand, within RR42_RS26020at 1184.331 kb on - strand, within RR42_RS26020at 1184.331 kb on - strand, within RR42_RS26020at 1184.331 kb on - strand, within RR42_RS26020at 1184.592 kb on - strandat 1184.820 kb on + strandat 1184.825 kb on - strandat 1184.825 kb on - strandat 1184.828 kb on + strandat 1184.828 kb on + strandat 1185.015 kb on + strandat 1185.145 kb on + strandat 1185.169 kb on + strand, within RR42_RS26025

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Zinc 0.1 mM
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1,182,730 + RR42_RS26015 0.53 -0.3
1,182,730 + RR42_RS26015 0.53 +1.0
1,182,865 + RR42_RS26015 0.62 -0.3
1,182,865 + RR42_RS26015 0.62 +1.0
1,182,866 - RR42_RS26015 0.62 +1.1
1,182,866 - RR42_RS26015 0.62 +0.0
1,182,866 - RR42_RS26015 0.62 +0.0
1,183,171 + RR42_RS26015 0.83 -2.4
1,183,171 + RR42_RS26015 0.83 +0.7
1,183,172 - RR42_RS26015 0.83 +0.1
1,183,172 - RR42_RS26015 0.83 -0.1
1,183,231 + RR42_RS26015 0.86 +2.1
1,183,232 - RR42_RS26015 0.87 +0.0
1,183,258 - RR42_RS26015 0.88 -0.3
1,183,306 - -0.7
1,183,356 + +0.6
1,183,467 + -0.4
1,183,469 + +0.6
1,183,470 - -0.5
1,183,470 - +1.6
1,183,491 + -0.4
1,183,539 + -0.7
1,183,613 + +0.7
1,183,669 + -2.1
1,183,669 + -0.4
1,183,769 + +0.6
1,183,910 + RR42_RS26020 0.26 +1.3
1,183,910 + RR42_RS26020 0.26 -1.6
1,183,911 - RR42_RS26020 0.26 -1.2
1,183,911 - RR42_RS26020 0.26 -1.2
1,183,911 - RR42_RS26020 0.26 -1.9
1,184,120 + RR42_RS26020 0.50 +0.1
1,184,121 - RR42_RS26020 0.50 +0.3
1,184,273 - RR42_RS26020 0.68 +1.6
1,184,331 - RR42_RS26020 0.75 +0.2
1,184,331 - RR42_RS26020 0.75 -1.2
1,184,331 - RR42_RS26020 0.75 +0.1
1,184,592 - +2.6
1,184,820 + +0.5
1,184,825 - -0.7
1,184,825 - -0.4
1,184,828 + -0.5
1,184,828 + +0.1
1,185,015 + +1.0
1,185,145 + +0.3
1,185,169 + RR42_RS26025 0.11 +1.3

Or see this region's nucleotide sequence