Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26010

Experiment: R2A with Zinc 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26005 and RR42_RS26010 are separated by 791 nucleotidesRR42_RS26010 and RR42_RS26015 are separated by 169 nucleotides RR42_RS26005: RR42_RS26005 - GntR family transcriptional regulator, at 1,178,394 to 1,179,797 _RS26005 RR42_RS26010: RR42_RS26010 - integrase, at 1,180,589 to 1,181,761 _RS26010 RR42_RS26015: RR42_RS26015 - hypothetical protein, at 1,181,931 to 1,183,433 _RS26015 Position (kb) 1180 1181 1182Strain fitness (log2 ratio) -3 -2 -1 0 1at 1179.832 kb on - strandat 1180.240 kb on + strandat 1180.241 kb on - strandat 1180.337 kb on + strandat 1180.360 kb on + strandat 1180.541 kb on - strandat 1180.541 kb on - strandat 1180.541 kb on - strandat 1180.541 kb on - strandat 1180.545 kb on - strandat 1181.755 kb on + strandat 1181.755 kb on + strandat 1181.896 kb on + strandat 1181.897 kb on - strandat 1182.010 kb on + strandat 1182.011 kb on - strandat 1182.019 kb on - strandat 1182.232 kb on + strand, within RR42_RS26015at 1182.253 kb on - strand, within RR42_RS26015at 1182.265 kb on + strand, within RR42_RS26015at 1182.282 kb on - strand, within RR42_RS26015at 1182.310 kb on - strand, within RR42_RS26015at 1182.403 kb on + strand, within RR42_RS26015at 1182.430 kb on + strand, within RR42_RS26015at 1182.430 kb on + strand, within RR42_RS26015at 1182.430 kb on + strand, within RR42_RS26015at 1182.430 kb on + strand, within RR42_RS26015at 1182.430 kb on + strand, within RR42_RS26015at 1182.431 kb on - strand, within RR42_RS26015at 1182.730 kb on + strand, within RR42_RS26015at 1182.730 kb on + strand, within RR42_RS26015

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Zinc 0.1 mM
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1,179,832 - +0.6
1,180,240 + +0.2
1,180,241 - -0.3
1,180,337 + -0.6
1,180,360 + +0.3
1,180,541 - +0.9
1,180,541 - -2.2
1,180,541 - -0.3
1,180,541 - -0.1
1,180,545 - -2.8
1,181,755 + -0.5
1,181,755 + -1.0
1,181,896 + +0.5
1,181,897 - +0.2
1,182,010 + +0.1
1,182,011 - -0.2
1,182,019 - +0.9
1,182,232 + RR42_RS26015 0.20 +0.3
1,182,253 - RR42_RS26015 0.21 -0.6
1,182,265 + RR42_RS26015 0.22 +0.6
1,182,282 - RR42_RS26015 0.23 -0.1
1,182,310 - RR42_RS26015 0.25 -0.3
1,182,403 + RR42_RS26015 0.31 -0.5
1,182,430 + RR42_RS26015 0.33 -2.9
1,182,430 + RR42_RS26015 0.33 +0.5
1,182,430 + RR42_RS26015 0.33 -2.1
1,182,430 + RR42_RS26015 0.33 +0.5
1,182,430 + RR42_RS26015 0.33 +0.4
1,182,431 - RR42_RS26015 0.33 +0.3
1,182,730 + RR42_RS26015 0.53 -0.3
1,182,730 + RR42_RS26015 0.53 +1.0

Or see this region's nucleotide sequence