Experiment: R2A with Zinc 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23050 and RR42_RS23055 are separated by 55 nucleotides RR42_RS23055 and RR42_RS23060 are separated by 205 nucleotides
RR42_RS23050: RR42_RS23050 - 4-oxalomesaconate tautomerase, at 505,646 to 506,725
_RS23050
RR42_RS23055: RR42_RS23055 - ABC transporter substrate-binding protein, at 506,781 to 507,728
_RS23055
RR42_RS23060: RR42_RS23060 - hypothetical protein, at 507,934 to 508,926
_RS23060
Position (kb) 506
507
508 Strain fitness (log2 ratio) -2
-1
0
1 at 505.866 kb on + strand, within RR42_RS23050 at 505.867 kb on - strand, within RR42_RS23050 at 505.867 kb on - strand, within RR42_RS23050 at 505.867 kb on - strand, within RR42_RS23050 at 505.867 kb on - strand, within RR42_RS23050 at 505.867 kb on - strand, within RR42_RS23050 at 505.908 kb on + strand, within RR42_RS23050 at 506.023 kb on + strand, within RR42_RS23050 at 506.075 kb on + strand, within RR42_RS23050 at 506.076 kb on - strand, within RR42_RS23050 at 506.086 kb on + strand, within RR42_RS23050 at 506.221 kb on + strand, within RR42_RS23050 at 506.513 kb on + strand, within RR42_RS23050 at 506.514 kb on - strand, within RR42_RS23050 at 506.760 kb on + strand at 506.761 kb on - strand at 506.766 kb on + strand at 506.789 kb on + strand at 506.790 kb on - strand at 506.994 kb on + strand, within RR42_RS23055 at 507.023 kb on + strand, within RR42_RS23055 at 507.023 kb on + strand, within RR42_RS23055 at 507.024 kb on - strand, within RR42_RS23055 at 507.024 kb on - strand, within RR42_RS23055 at 507.084 kb on + strand, within RR42_RS23055 at 507.084 kb on + strand, within RR42_RS23055 at 507.161 kb on - strand, within RR42_RS23055 at 507.223 kb on - strand, within RR42_RS23055 at 507.268 kb on + strand, within RR42_RS23055 at 507.309 kb on + strand, within RR42_RS23055 at 507.413 kb on - strand, within RR42_RS23055 at 507.627 kb on + strand, within RR42_RS23055 at 507.627 kb on + strand, within RR42_RS23055 at 507.627 kb on + strand, within RR42_RS23055 at 507.628 kb on - strand, within RR42_RS23055 at 507.628 kb on - strand, within RR42_RS23055 at 507.973 kb on + strand at 507.974 kb on - strand at 507.974 kb on - strand at 508.044 kb on - strand, within RR42_RS23060 at 508.282 kb on + strand, within RR42_RS23060 at 508.294 kb on + strand, within RR42_RS23060 at 508.294 kb on + strand, within RR42_RS23060 at 508.363 kb on + strand, within RR42_RS23060 at 508.363 kb on + strand, within RR42_RS23060 at 508.396 kb on + strand, within RR42_RS23060 at 508.495 kb on - strand, within RR42_RS23060 at 508.642 kb on + strand, within RR42_RS23060
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Zinc 0.1 mM remove 505,866 + RR42_RS23050 0.20 +0.3 505,867 - RR42_RS23050 0.20 +0.9 505,867 - RR42_RS23050 0.20 +0.9 505,867 - RR42_RS23050 0.20 +0.3 505,867 - RR42_RS23050 0.20 +0.3 505,867 - RR42_RS23050 0.20 -1.5 505,908 + RR42_RS23050 0.24 +0.1 506,023 + RR42_RS23050 0.35 +1.2 506,075 + RR42_RS23050 0.40 +0.5 506,076 - RR42_RS23050 0.40 -1.1 506,086 + RR42_RS23050 0.41 +1.3 506,221 + RR42_RS23050 0.53 +1.1 506,513 + RR42_RS23050 0.80 -1.1 506,514 - RR42_RS23050 0.80 -0.2 506,760 + -0.3 506,761 - +0.5 506,766 + -0.2 506,789 + +0.8 506,790 - -0.3 506,994 + RR42_RS23055 0.22 +0.4 507,023 + RR42_RS23055 0.26 +0.4 507,023 + RR42_RS23055 0.26 -0.5 507,024 - RR42_RS23055 0.26 -0.2 507,024 - RR42_RS23055 0.26 -0.8 507,084 + RR42_RS23055 0.32 +1.4 507,084 + RR42_RS23055 0.32 +0.0 507,161 - RR42_RS23055 0.40 +0.4 507,223 - RR42_RS23055 0.47 -0.8 507,268 + RR42_RS23055 0.51 -0.4 507,309 + RR42_RS23055 0.56 +0.5 507,413 - RR42_RS23055 0.67 +0.8 507,627 + RR42_RS23055 0.89 -0.7 507,627 + RR42_RS23055 0.89 -2.0 507,627 + RR42_RS23055 0.89 -1.7 507,628 - RR42_RS23055 0.89 -0.2 507,628 - RR42_RS23055 0.89 +0.0 507,973 + -0.1 507,974 - +0.0 507,974 - -0.5 508,044 - RR42_RS23060 0.11 -1.6 508,282 + RR42_RS23060 0.35 -1.1 508,294 + RR42_RS23060 0.36 +0.8 508,294 + RR42_RS23060 0.36 +1.6 508,363 + RR42_RS23060 0.43 +0.4 508,363 + RR42_RS23060 0.43 -1.0 508,396 + RR42_RS23060 0.47 +1.5 508,495 - RR42_RS23060 0.56 -0.6 508,642 + RR42_RS23060 0.71 +0.6
Or see this region's nucleotide sequence