Experiment: R2A with Zinc 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22795 and RR42_RS22800 are separated by 30 nucleotides RR42_RS22800 and RR42_RS22805 are separated by 248 nucleotides
RR42_RS22795: RR42_RS22795 - hypothetical protein, at 446,477 to 447,442
_RS22795
RR42_RS22800: RR42_RS22800 - DSBA oxidoreductase, at 447,473 to 449,029
_RS22800
RR42_RS22805: RR42_RS22805 - LysR family transcriptional regulator, at 449,278 to 450,153
_RS22805
Position (kb) 447
448
449
450 Strain fitness (log2 ratio) -2
-1
0
1 at 446.728 kb on + strand, within RR42_RS22795 at 446.728 kb on + strand, within RR42_RS22795 at 446.728 kb on + strand, within RR42_RS22795 at 446.729 kb on - strand, within RR42_RS22795 at 446.729 kb on - strand, within RR42_RS22795 at 446.729 kb on - strand, within RR42_RS22795 at 447.017 kb on + strand, within RR42_RS22795 at 447.017 kb on + strand, within RR42_RS22795 at 447.018 kb on - strand, within RR42_RS22795 at 447.230 kb on + strand, within RR42_RS22795 at 447.230 kb on + strand, within RR42_RS22795 at 447.231 kb on - strand, within RR42_RS22795 at 447.231 kb on - strand, within RR42_RS22795 at 447.231 kb on - strand, within RR42_RS22795 at 447.231 kb on - strand, within RR42_RS22795 at 447.787 kb on - strand, within RR42_RS22800 at 447.972 kb on + strand, within RR42_RS22800 at 447.972 kb on + strand, within RR42_RS22800 at 447.972 kb on + strand, within RR42_RS22800 at 448.170 kb on + strand, within RR42_RS22800 at 448.170 kb on + strand, within RR42_RS22800 at 448.171 kb on - strand, within RR42_RS22800 at 448.171 kb on - strand, within RR42_RS22800 at 448.171 kb on - strand, within RR42_RS22800 at 448.172 kb on + strand, within RR42_RS22800 at 448.357 kb on + strand, within RR42_RS22800 at 448.357 kb on + strand, within RR42_RS22800 at 448.357 kb on + strand, within RR42_RS22800 at 448.358 kb on - strand, within RR42_RS22800 at 448.447 kb on + strand, within RR42_RS22800 at 448.447 kb on + strand, within RR42_RS22800 at 448.448 kb on - strand, within RR42_RS22800 at 448.481 kb on - strand, within RR42_RS22800 at 448.875 kb on + strand at 449.243 kb on - strand at 449.373 kb on + strand, within RR42_RS22805 at 449.566 kb on + strand, within RR42_RS22805 at 449.713 kb on + strand, within RR42_RS22805 at 449.714 kb on - strand, within RR42_RS22805 at 449.714 kb on - strand, within RR42_RS22805 at 449.714 kb on - strand, within RR42_RS22805 at 449.714 kb on - strand, within RR42_RS22805 at 449.715 kb on + strand, within RR42_RS22805 at 449.715 kb on + strand, within RR42_RS22805
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Zinc 0.1 mM remove 446,728 + RR42_RS22795 0.26 -0.2 446,728 + RR42_RS22795 0.26 -0.4 446,728 + RR42_RS22795 0.26 +0.8 446,729 - RR42_RS22795 0.26 -0.5 446,729 - RR42_RS22795 0.26 -0.4 446,729 - RR42_RS22795 0.26 +0.3 447,017 + RR42_RS22795 0.56 -1.0 447,017 + RR42_RS22795 0.56 -0.3 447,018 - RR42_RS22795 0.56 -1.9 447,230 + RR42_RS22795 0.78 -0.5 447,230 + RR42_RS22795 0.78 +0.5 447,231 - RR42_RS22795 0.78 -2.5 447,231 - RR42_RS22795 0.78 -1.1 447,231 - RR42_RS22795 0.78 +1.0 447,231 - RR42_RS22795 0.78 -0.4 447,787 - RR42_RS22800 0.20 +1.0 447,972 + RR42_RS22800 0.32 +0.3 447,972 + RR42_RS22800 0.32 +1.2 447,972 + RR42_RS22800 0.32 -0.1 448,170 + RR42_RS22800 0.45 +0.2 448,170 + RR42_RS22800 0.45 -0.4 448,171 - RR42_RS22800 0.45 -0.2 448,171 - RR42_RS22800 0.45 +1.3 448,171 - RR42_RS22800 0.45 +0.9 448,172 + RR42_RS22800 0.45 -1.6 448,357 + RR42_RS22800 0.57 +0.3 448,357 + RR42_RS22800 0.57 +0.5 448,357 + RR42_RS22800 0.57 -1.7 448,358 - RR42_RS22800 0.57 +0.8 448,447 + RR42_RS22800 0.63 -1.2 448,447 + RR42_RS22800 0.63 -0.2 448,448 - RR42_RS22800 0.63 -0.6 448,481 - RR42_RS22800 0.65 +0.0 448,875 + +1.3 449,243 - +0.5 449,373 + RR42_RS22805 0.11 -0.3 449,566 + RR42_RS22805 0.33 -0.7 449,713 + RR42_RS22805 0.50 +0.0 449,714 - RR42_RS22805 0.50 +1.0 449,714 - RR42_RS22805 0.50 -0.2 449,714 - RR42_RS22805 0.50 +0.3 449,714 - RR42_RS22805 0.50 +0.4 449,715 + RR42_RS22805 0.50 +0.8 449,715 + RR42_RS22805 0.50 -2.2
Or see this region's nucleotide sequence