Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22460

Experiment: R2A with Zinc 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22455 and RR42_RS22460 are separated by 146 nucleotidesRR42_RS22460 and RR42_RS22465 are separated by 67 nucleotides RR42_RS22455: RR42_RS22455 - 2-aminoethylphosphonate aminotransferase, at 373,963 to 375,027 _RS22455 RR42_RS22460: RR42_RS22460 - ABC transporter, at 375,174 to 375,872 _RS22460 RR42_RS22465: RR42_RS22465 - membrane protein, at 375,940 to 377,994 _RS22465 Position (kb) 375 376Strain fitness (log2 ratio) -2 -1 0 1 2at 374.257 kb on + strand, within RR42_RS22455at 374.438 kb on + strand, within RR42_RS22455at 374.438 kb on + strand, within RR42_RS22455at 374.438 kb on + strand, within RR42_RS22455at 374.439 kb on - strand, within RR42_RS22455at 374.439 kb on - strand, within RR42_RS22455at 374.439 kb on - strand, within RR42_RS22455at 374.605 kb on + strand, within RR42_RS22455at 374.605 kb on + strand, within RR42_RS22455at 374.606 kb on - strand, within RR42_RS22455at 374.608 kb on + strand, within RR42_RS22455at 374.608 kb on + strand, within RR42_RS22455at 374.652 kb on + strand, within RR42_RS22455at 374.652 kb on + strand, within RR42_RS22455at 374.661 kb on + strand, within RR42_RS22455at 374.672 kb on + strand, within RR42_RS22455at 374.672 kb on + strand, within RR42_RS22455at 374.672 kb on + strand, within RR42_RS22455at 374.672 kb on + strand, within RR42_RS22455at 374.672 kb on + strand, within RR42_RS22455at 374.672 kb on + strand, within RR42_RS22455at 374.673 kb on - strand, within RR42_RS22455at 374.680 kb on + strand, within RR42_RS22455at 374.680 kb on + strand, within RR42_RS22455at 374.681 kb on - strand, within RR42_RS22455at 374.681 kb on - strand, within RR42_RS22455at 374.681 kb on - strand, within RR42_RS22455at 374.683 kb on + strand, within RR42_RS22455at 374.870 kb on - strand, within RR42_RS22455at 374.914 kb on + strand, within RR42_RS22455at 374.915 kb on - strand, within RR42_RS22455at 374.915 kb on - strand, within RR42_RS22455at 374.915 kb on - strand, within RR42_RS22455at 374.915 kb on - strand, within RR42_RS22455at 374.933 kb on + strandat 374.970 kb on + strandat 375.026 kb on - strandat 375.050 kb on + strandat 375.101 kb on + strandat 375.101 kb on + strandat 375.102 kb on - strandat 375.102 kb on - strandat 375.102 kb on - strandat 375.102 kb on - strandat 375.102 kb on - strandat 375.107 kb on + strandat 375.107 kb on + strandat 375.108 kb on - strandat 375.108 kb on - strandat 375.260 kb on + strand, within RR42_RS22460at 375.471 kb on + strand, within RR42_RS22460at 375.472 kb on - strand, within RR42_RS22460at 375.664 kb on + strand, within RR42_RS22460at 375.664 kb on + strand, within RR42_RS22460at 375.664 kb on + strand, within RR42_RS22460at 375.665 kb on - strand, within RR42_RS22460at 375.665 kb on - strand, within RR42_RS22460at 375.761 kb on + strand, within RR42_RS22460at 375.761 kb on + strand, within RR42_RS22460at 375.762 kb on - strand, within RR42_RS22460at 375.847 kb on - strandat 375.847 kb on - strandat 375.860 kb on + strandat 375.861 kb on - strandat 375.875 kb on + strandat 375.887 kb on + strandat 375.887 kb on + strandat 375.887 kb on + strandat 375.887 kb on + strandat 375.888 kb on - strandat 375.888 kb on - strandat 375.925 kb on + strandat 375.925 kb on + strandat 375.933 kb on + strandat 376.065 kb on + strandat 376.193 kb on + strand, within RR42_RS22465at 376.194 kb on - strand, within RR42_RS22465at 376.634 kb on + strand, within RR42_RS22465at 376.635 kb on - strand, within RR42_RS22465at 376.766 kb on + strand, within RR42_RS22465at 376.766 kb on + strand, within RR42_RS22465at 376.767 kb on - strand, within RR42_RS22465at 376.823 kb on + strand, within RR42_RS22465at 376.824 kb on - strand, within RR42_RS22465

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Zinc 0.1 mM
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374,257 + RR42_RS22455 0.28 +1.3
374,438 + RR42_RS22455 0.45 +0.4
374,438 + RR42_RS22455 0.45 -0.7
374,438 + RR42_RS22455 0.45 -0.4
374,439 - RR42_RS22455 0.45 +2.5
374,439 - RR42_RS22455 0.45 -0.1
374,439 - RR42_RS22455 0.45 -1.8
374,605 + RR42_RS22455 0.60 -1.0
374,605 + RR42_RS22455 0.60 -0.9
374,606 - RR42_RS22455 0.60 +0.4
374,608 + RR42_RS22455 0.61 -1.0
374,608 + RR42_RS22455 0.61 -0.5
374,652 + RR42_RS22455 0.65 +0.9
374,652 + RR42_RS22455 0.65 -0.3
374,661 + RR42_RS22455 0.66 -0.3
374,672 + RR42_RS22455 0.67 -0.9
374,672 + RR42_RS22455 0.67 -0.3
374,672 + RR42_RS22455 0.67 +0.8
374,672 + RR42_RS22455 0.67 +0.9
374,672 + RR42_RS22455 0.67 +0.3
374,672 + RR42_RS22455 0.67 -0.2
374,673 - RR42_RS22455 0.67 -0.7
374,680 + RR42_RS22455 0.67 -0.1
374,680 + RR42_RS22455 0.67 -0.1
374,681 - RR42_RS22455 0.67 +0.7
374,681 - RR42_RS22455 0.67 +0.7
374,681 - RR42_RS22455 0.67 -0.3
374,683 + RR42_RS22455 0.68 -0.1
374,870 - RR42_RS22455 0.85 -0.3
374,914 + RR42_RS22455 0.89 +0.6
374,915 - RR42_RS22455 0.89 +1.0
374,915 - RR42_RS22455 0.89 +1.9
374,915 - RR42_RS22455 0.89 +1.4
374,915 - RR42_RS22455 0.89 -1.7
374,933 + +1.7
374,970 + -0.7
375,026 - +1.3
375,050 + +1.8
375,101 + +0.4
375,101 + -1.6
375,102 - +0.3
375,102 - +0.8
375,102 - -0.2
375,102 - -2.3
375,102 - -1.3
375,107 + +0.8
375,107 + -0.1
375,108 - -1.5
375,108 - +0.7
375,260 + RR42_RS22460 0.12 -0.4
375,471 + RR42_RS22460 0.42 +0.2
375,472 - RR42_RS22460 0.43 +1.4
375,664 + RR42_RS22460 0.70 -0.4
375,664 + RR42_RS22460 0.70 -0.9
375,664 + RR42_RS22460 0.70 +0.3
375,665 - RR42_RS22460 0.70 +0.2
375,665 - RR42_RS22460 0.70 +0.4
375,761 + RR42_RS22460 0.84 -0.1
375,761 + RR42_RS22460 0.84 +0.9
375,762 - RR42_RS22460 0.84 +2.7
375,847 - -0.1
375,847 - +1.1
375,860 + +0.3
375,861 - +1.1
375,875 + -1.1
375,887 + +0.3
375,887 + -0.1
375,887 + +0.6
375,887 + +0.3
375,888 - +0.8
375,888 - +1.2
375,925 + +0.7
375,925 + -0.3
375,933 + -0.7
376,065 + -0.5
376,193 + RR42_RS22465 0.12 +1.1
376,194 - RR42_RS22465 0.12 -0.7
376,634 + RR42_RS22465 0.34 -1.3
376,635 - RR42_RS22465 0.34 -0.7
376,766 + RR42_RS22465 0.40 +0.3
376,766 + RR42_RS22465 0.40 +0.3
376,767 - RR42_RS22465 0.40 -0.1
376,823 + RR42_RS22465 0.43 -0.2
376,824 - RR42_RS22465 0.43 -0.7

Or see this region's nucleotide sequence