Experiment: R2A with Zinc 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20960 and RR42_RS20965 are separated by 44 nucleotides RR42_RS20965 and RR42_RS20970 are separated by 63 nucleotides
RR42_RS20960: RR42_RS20960 - SAM-dependent methyltransferase, at 30,079 to 30,891
_RS20960
RR42_RS20965: RR42_RS20965 - transferase, at 30,936 to 32,123
_RS20965
RR42_RS20970: RR42_RS20970 - hypothetical protein, at 32,187 to 33,467
_RS20970
Position (kb) 30
31
32
33 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 29.957 kb on + strand at 30.126 kb on + strand at 30.307 kb on + strand, within RR42_RS20960 at 30.307 kb on + strand, within RR42_RS20960 at 30.307 kb on + strand, within RR42_RS20960 at 30.307 kb on + strand, within RR42_RS20960 at 30.308 kb on - strand, within RR42_RS20960 at 30.308 kb on - strand, within RR42_RS20960 at 30.308 kb on - strand, within RR42_RS20960 at 30.354 kb on - strand, within RR42_RS20960 at 30.451 kb on + strand, within RR42_RS20960 at 30.452 kb on - strand, within RR42_RS20960 at 30.701 kb on - strand, within RR42_RS20960 at 30.751 kb on - strand, within RR42_RS20960 at 30.865 kb on + strand at 31.180 kb on - strand, within RR42_RS20965 at 31.438 kb on - strand, within RR42_RS20965 at 31.881 kb on - strand, within RR42_RS20965 at 31.881 kb on - strand, within RR42_RS20965 at 32.122 kb on - strand at 32.212 kb on - strand at 32.292 kb on + strand at 32.293 kb on - strand at 32.556 kb on + strand, within RR42_RS20970 at 32.676 kb on + strand, within RR42_RS20970 at 32.776 kb on + strand, within RR42_RS20970 at 32.826 kb on + strand, within RR42_RS20970 at 32.826 kb on + strand, within RR42_RS20970 at 32.827 kb on - strand, within RR42_RS20970 at 32.827 kb on - strand, within RR42_RS20970 at 32.827 kb on - strand, within RR42_RS20970 at 32.871 kb on + strand, within RR42_RS20970 at 32.872 kb on - strand, within RR42_RS20970 at 33.000 kb on + strand, within RR42_RS20970 at 33.122 kb on - strand, within RR42_RS20970 at 33.122 kb on - strand, within RR42_RS20970
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Zinc 0.1 mM remove 29,957 + +0.1 30,126 + -0.1 30,307 + RR42_RS20960 0.28 +1.0 30,307 + RR42_RS20960 0.28 -0.0 30,307 + RR42_RS20960 0.28 +0.7 30,307 + RR42_RS20960 0.28 -0.3 30,308 - RR42_RS20960 0.28 +0.2 30,308 - RR42_RS20960 0.28 +0.1 30,308 - RR42_RS20960 0.28 -0.3 30,354 - RR42_RS20960 0.34 -0.6 30,451 + RR42_RS20960 0.46 -0.4 30,452 - RR42_RS20960 0.46 -0.8 30,701 - RR42_RS20960 0.77 +1.7 30,751 - RR42_RS20960 0.83 +2.6 30,865 + -1.1 31,180 - RR42_RS20965 0.21 -1.2 31,438 - RR42_RS20965 0.42 -0.3 31,881 - RR42_RS20965 0.80 +0.3 31,881 - RR42_RS20965 0.80 -1.8 32,122 - -1.1 32,212 - -0.4 32,292 + -0.1 32,293 - +0.0 32,556 + RR42_RS20970 0.29 -2.5 32,676 + RR42_RS20970 0.38 +0.2 32,776 + RR42_RS20970 0.46 +1.6 32,826 + RR42_RS20970 0.50 -1.5 32,826 + RR42_RS20970 0.50 -0.9 32,827 - RR42_RS20970 0.50 -0.1 32,827 - RR42_RS20970 0.50 -1.5 32,827 - RR42_RS20970 0.50 -0.3 32,871 + RR42_RS20970 0.53 -1.3 32,872 - RR42_RS20970 0.53 -1.3 33,000 + RR42_RS20970 0.63 -1.4 33,122 - RR42_RS20970 0.73 +3.0 33,122 - RR42_RS20970 0.73 -1.2
Or see this region's nucleotide sequence