Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16600

Experiment: R2A with Zinc 0.1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Zinc 0.1 mM
3,596,507	+		RR42_RS16595	0.20	+0.1
3,596,613	+		RR42_RS16595	0.28	-1.1
3,596,613	+		RR42_RS16595	0.28	+1.3
3,596,616	-		RR42_RS16595	0.28	-1.6
3,596,624	+		RR42_RS16595	0.29	-0.5
3,596,705	+		RR42_RS16595	0.36	+0.9
3,596,706	-		RR42_RS16595	0.36	-0.4
3,596,776	-		RR42_RS16595	0.41	-0.7
3,596,776	-		RR42_RS16595	0.41	+0.6
3,596,776	-		RR42_RS16595	0.41	+0.2
3,596,776	-		RR42_RS16595	0.41	-0.8
3,596,917	+		RR42_RS16595	0.53	-1.3
3,596,932	+		RR42_RS16595	0.54	-0.5
3,596,993	-		RR42_RS16595	0.59	+1.1
3,597,046	+		RR42_RS16595	0.63	+1.2
3,597,065	+		RR42_RS16595	0.65	+1.2
3,597,078	+		RR42_RS16595	0.66	-1.1
3,597,108	+		RR42_RS16595	0.68	-0.9
3,597,126	+		RR42_RS16595	0.69	+0.2
3,597,163	+		RR42_RS16595	0.72	-1.2
3,597,164	-		RR42_RS16595	0.73	+0.4
3,597,164	-		RR42_RS16595	0.73	+1.2
3,597,172	+		RR42_RS16595	0.73	-0.1
3,597,204	+		RR42_RS16595	0.76	-3.2
3,597,207	+		RR42_RS16595	0.76	+0.2
3,597,207	+		RR42_RS16595	0.76	-0.5
3,597,207	+		RR42_RS16595	0.76	-1.3
3,597,207	+		RR42_RS16595	0.76	-1.5
3,597,208	-		RR42_RS16595	0.76	-0.1
3,597,208	-		RR42_RS16595	0.76	+3.1
3,597,208	-		RR42_RS16595	0.76	-0.1
3,597,329	+		RR42_RS16595	0.86	+0.5
3,597,329	+		RR42_RS16595	0.86	-1.4
3,597,330	-		RR42_RS16595	0.86	+0.7
3,597,364	+		RR42_RS16595	0.89	-0.4
3,597,617	+				-0.2
3,597,618	-				+0.6
3,597,618	-				-1.0
3,597,667	+		RR42_RS16600	0.10	-1.9
3,597,735	+		RR42_RS16600	0.15	-0.6
3,597,735	+		RR42_RS16600	0.15	+0.5
3,597,736	-		RR42_RS16600	0.15	+0.6
3,597,852	-		RR42_RS16600	0.22	-1.0
3,597,852	-		RR42_RS16600	0.22	+0.5
3,597,876	+		RR42_RS16600	0.23	+0.6
3,597,876	+		RR42_RS16600	0.23	+1.9
3,597,961	-		RR42_RS16600	0.29	-0.2
3,597,961	-		RR42_RS16600	0.29	+0.2
3,597,980	+		RR42_RS16600	0.30	+0.7
3,597,981	-		RR42_RS16600	0.30	-0.0
3,598,073	-		RR42_RS16600	0.36	-0.0
3,598,073	-		RR42_RS16600	0.36	-0.5
3,598,094	+		RR42_RS16600	0.37	+0.5
3,598,094	+		RR42_RS16600	0.37	-0.1
3,598,094	+		RR42_RS16600	0.37	-0.3
3,598,094	+		RR42_RS16600	0.37	+0.4
3,598,137	+		RR42_RS16600	0.40	+1.0
3,598,138	-		RR42_RS16600	0.40	+0.2
3,598,138	-		RR42_RS16600	0.40	+0.6
3,598,138	-		RR42_RS16600	0.40	+1.7
3,598,273	+		RR42_RS16600	0.48	-0.6
3,598,273	+		RR42_RS16600	0.48	+0.2
3,598,274	-		RR42_RS16600	0.48	-0.4
3,598,274	-		RR42_RS16600	0.48	+0.5
3,598,291	+		RR42_RS16600	0.49	-0.3
3,598,292	-		RR42_RS16600	0.49	+1.0
3,598,292	-		RR42_RS16600	0.49	+0.4
3,598,300	+		RR42_RS16600	0.50	-1.1
3,598,301	-		RR42_RS16600	0.50	-0.1
3,598,301	-		RR42_RS16600	0.50	-1.1
3,598,329	+		RR42_RS16600	0.52	+0.4
3,598,329	+		RR42_RS16600	0.52	+0.1
3,598,329	+		RR42_RS16600	0.52	-0.6
3,598,329	+		RR42_RS16600	0.52	-2.0
3,598,329	+		RR42_RS16600	0.52	-0.2
3,598,331	+		RR42_RS16600	0.52	-0.1
3,598,332	-		RR42_RS16600	0.52	+0.3
3,598,454	+		RR42_RS16600	0.59	+2.7
3,598,455	-		RR42_RS16600	0.60	+1.5
3,598,537	+		RR42_RS16600	0.65	-0.8
3,598,538	-		RR42_RS16600	0.65	+0.3
3,598,538	-		RR42_RS16600	0.65	+0.6
3,598,637	+		RR42_RS16600	0.71	+1.2
3,598,637	+		RR42_RS16600	0.71	+1.2
3,598,638	-		RR42_RS16600	0.71	+1.5
3,598,639	+		RR42_RS16600	0.71	-2.3
3,598,784	-		RR42_RS16600	0.80	+0.1
3,598,836	-		RR42_RS16600	0.83	+1.3
3,598,836	-		RR42_RS16600	0.83	-0.4
3,598,842	-		RR42_RS16600	0.84	-0.7
3,598,881	-		RR42_RS16600	0.86	-1.6
3,598,882	+		RR42_RS16600	0.86	+0.4
3,598,900	-		RR42_RS16600	0.87	-0.3
3,598,936	+		RR42_RS16600	0.89	-1.6
3,598,955	-				-0.2
3,599,004	+				-0.4
3,599,192	-				+0.5
3,599,247	+				+0.5
3,599,279	+				-0.9
3,599,279	+				-0.4
3,599,280	-				-0.2
3,599,280	-				+0.1
3,599,280	-				-0.4
3,599,297	+				+0.1
3,599,297	+				+0.5
3,599,337	+		RR42_RS16605	0.11	+1.0
3,599,337	+		RR42_RS16605	0.11	+0.9
3,599,337	+		RR42_RS16605	0.11	+0.9
3,599,442	-		RR42_RS16605	0.21	+1.5
3,599,442	-		RR42_RS16605	0.21	-0.1
3,599,564	+		RR42_RS16605	0.34	-1.6
3,599,565	-		RR42_RS16605	0.34	-2.2
3,599,565	-		RR42_RS16605	0.34	+0.9
3,599,654	+		RR42_RS16605	0.43	-1.1
3,599,655	-		RR42_RS16605	0.43	-0.1
3,599,655	-		RR42_RS16605	0.43	+1.3
3,599,696	+		RR42_RS16605	0.47	-0.3
3,599,696	+		RR42_RS16605	0.47	-0.1
3,599,697	-		RR42_RS16605	0.47	+1.2
3,599,697	-		RR42_RS16605	0.47	-0.0
3,599,697	-		RR42_RS16605	0.47	-0.5
3,599,697	-		RR42_RS16605	0.47	-0.9
3,599,697	-		RR42_RS16605	0.47	-0.4
3,599,697	-		RR42_RS16605	0.47	+0.5
3,599,697	-		RR42_RS16605	0.47	-0.1
3,599,709	-		RR42_RS16605	0.49	+0.9
3,599,709	-		RR42_RS16605	0.49	+1.6
3,599,736	-		RR42_RS16605	0.51	-1.3
3,599,785	+		RR42_RS16605	0.56	-0.5
3,599,785	+		RR42_RS16605	0.56	+1.3
3,599,785	+		RR42_RS16605	0.56	-0.5
3,599,785	+		RR42_RS16605	0.56	+0.8
3,599,785	+		RR42_RS16605	0.56	+0.4
3,599,786	-		RR42_RS16605	0.56	+0.3
3,599,786	-		RR42_RS16605	0.56	+0.5
3,599,792	+		RR42_RS16605	0.57	+0.4
3,599,792	+		RR42_RS16605	0.57	+0.1
3,599,793	-		RR42_RS16605	0.57	-1.4
3,599,793	-		RR42_RS16605	0.57	-0.6
3,599,845	-		RR42_RS16605	0.62	+1.5
3,599,903	+		RR42_RS16605	0.68	+0.4
3,599,904	-		RR42_RS16605	0.69	+0.5
3,599,904	-		RR42_RS16605	0.69	+1.5
3,599,978	-		RR42_RS16605	0.76	+0.4
3,599,978	-		RR42_RS16605	0.76	+0.3