Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09565

Experiment: R2A with Zinc 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS09555 and RR42_RS09560 overlap by 4 nucleotidesRR42_RS09560 and RR42_RS09565 are separated by 10 nucleotidesRR42_RS09565 and RR42_RS09570 are separated by 36 nucleotides RR42_RS09555: RR42_RS09555 - universal stress protein UspA, at 2,025,306 to 2,025,806 _RS09555 RR42_RS09560: RR42_RS09560 - hypothetical protein, at 2,025,803 to 2,026,411 _RS09560 RR42_RS09565: RR42_RS09565 - hypothetical protein, at 2,026,422 to 2,026,952 _RS09565 RR42_RS09570: RR42_RS09570 - hypothetical protein, at 2,026,989 to 2,028,572 _RS09570 Position (kb) 2026 2027Strain fitness (log2 ratio) -3 -2 -1 0 1at 2025.432 kb on + strand, within RR42_RS09555at 2025.432 kb on + strand, within RR42_RS09555at 2025.432 kb on + strand, within RR42_RS09555at 2025.695 kb on - strand, within RR42_RS09555at 2026.038 kb on + strand, within RR42_RS09560at 2026.039 kb on - strand, within RR42_RS09560at 2026.039 kb on - strand, within RR42_RS09560at 2026.131 kb on - strand, within RR42_RS09560at 2026.306 kb on + strand, within RR42_RS09560at 2026.307 kb on - strand, within RR42_RS09560at 2026.393 kb on - strandat 2026.443 kb on + strandat 2026.444 kb on - strandat 2026.447 kb on - strandat 2026.594 kb on + strand, within RR42_RS09565at 2026.594 kb on + strand, within RR42_RS09565at 2026.595 kb on - strand, within RR42_RS09565at 2027.308 kb on + strand, within RR42_RS09570at 2027.710 kb on + strand, within RR42_RS09570at 2027.758 kb on + strand, within RR42_RS09570at 2027.759 kb on - strand, within RR42_RS09570at 2027.762 kb on + strand, within RR42_RS09570

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Zinc 0.1 mM
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2,025,432 + RR42_RS09555 0.25 -0.8
2,025,432 + RR42_RS09555 0.25 +1.4
2,025,432 + RR42_RS09555 0.25 -1.0
2,025,695 - RR42_RS09555 0.78 -2.9
2,026,038 + RR42_RS09560 0.39 -0.2
2,026,039 - RR42_RS09560 0.39 +0.0
2,026,039 - RR42_RS09560 0.39 -0.9
2,026,131 - RR42_RS09560 0.54 -0.2
2,026,306 + RR42_RS09560 0.83 +0.2
2,026,307 - RR42_RS09560 0.83 +0.8
2,026,393 - -0.6
2,026,443 + -1.0
2,026,444 - -1.6
2,026,447 - -0.1
2,026,594 + RR42_RS09565 0.32 -0.6
2,026,594 + RR42_RS09565 0.32 +1.2
2,026,595 - RR42_RS09565 0.33 +1.0
2,027,308 + RR42_RS09570 0.20 -0.6
2,027,710 + RR42_RS09570 0.46 +0.2
2,027,758 + RR42_RS09570 0.49 +0.2
2,027,759 - RR42_RS09570 0.49 +0.4
2,027,762 + RR42_RS09570 0.49 +0.6

Or see this region's nucleotide sequence