Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05040

Experiment: R2A with Zinc 0.1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Zinc 0.1 mM
1,112,710	+		RR42_RS05035	0.74	+0.9
1,112,710	+		RR42_RS05035	0.74	-0.5
1,112,710	+		RR42_RS05035	0.74	+0.4
1,112,710	+		RR42_RS05035	0.74	+0.0
1,112,710	+		RR42_RS05035	0.74	-0.9
1,112,710	+		RR42_RS05035	0.74	-1.2
1,112,710	+		RR42_RS05035	0.74	-1.3
1,112,710	+		RR42_RS05035	0.74	-0.3
1,112,711	-		RR42_RS05035	0.74	+0.2
1,112,711	-		RR42_RS05035	0.74	-0.5
1,112,711	-		RR42_RS05035	0.74	-1.0
1,112,711	-		RR42_RS05035	0.74	-0.1
1,112,711	-		RR42_RS05035	0.74	-1.4
1,112,882	-				-0.9
1,112,882	-				-0.5
1,113,009	+				+0.4
1,113,010	-				+1.2
1,113,037	+				+0.8
1,113,037	+				+1.0
1,113,038	-				-1.2
1,113,060	+				+0.0
1,113,075	-				-1.1
1,113,103	+				-1.0
1,113,103	+				-0.8
1,113,191	+				-1.2
1,113,191	+				+1.2
1,113,191	+				+0.1
1,113,191	+				-1.3
1,113,191	+				+0.3
1,113,192	-				+1.2
1,113,192	-				+1.8
1,113,192	-				+1.2
1,113,231	+				-0.2
1,113,242	-				+0.7
1,113,439	+				-0.5
1,113,479	-				-2.0
1,113,486	-		RR42_RS05040	0.10	-0.3
1,113,497	+		RR42_RS05040	0.11	+0.4
1,113,497	+		RR42_RS05040	0.11	+0.8
1,113,497	+		RR42_RS05040	0.11	+0.4
1,113,497	+		RR42_RS05040	0.11	-0.5
1,113,497	+		RR42_RS05040	0.11	-0.6
1,113,497	+		RR42_RS05040	0.11	+0.3
1,113,497	+		RR42_RS05040	0.11	-0.6
1,113,497	+		RR42_RS05040	0.11	-0.5
1,113,498	-		RR42_RS05040	0.11	+0.8
1,113,498	-		RR42_RS05040	0.11	+0.2
1,113,498	-		RR42_RS05040	0.11	-0.9
1,113,498	-		RR42_RS05040	0.11	+0.9
1,113,498	-		RR42_RS05040	0.11	+1.2
1,113,498	-		RR42_RS05040	0.11	+1.1
1,113,498	-		RR42_RS05040	0.11	-0.0
1,113,498	-		RR42_RS05040	0.11	+1.4
1,113,498	-		RR42_RS05040	0.11	+0.0
1,113,498	-		RR42_RS05040	0.11	+0.8
1,113,498	-		RR42_RS05040	0.11	+0.0
1,113,499	+		RR42_RS05040	0.11	-1.6
1,113,499	+		RR42_RS05040	0.11	+0.4
1,113,499	+		RR42_RS05040	0.11	-0.5
1,113,500	-		RR42_RS05040	0.11	+0.3
1,113,653	+		RR42_RS05040	0.18	-0.5
1,113,653	+		RR42_RS05040	0.18	+0.1
1,113,654	-		RR42_RS05040	0.19	+0.2
1,113,654	-		RR42_RS05040	0.19	+1.2
1,113,656	+		RR42_RS05040	0.19	+0.8
1,113,657	-		RR42_RS05040	0.19	+0.1
1,113,657	-		RR42_RS05040	0.19	+0.1
1,113,657	-		RR42_RS05040	0.19	+0.3
1,113,728	+		RR42_RS05040	0.22	+0.6
1,113,728	+		RR42_RS05040	0.22	-0.3
1,113,728	+		RR42_RS05040	0.22	+0.8
1,113,729	-		RR42_RS05040	0.22	-1.0
1,113,729	-		RR42_RS05040	0.22	+1.3
1,113,729	-		RR42_RS05040	0.22	-0.8
1,113,730	+		RR42_RS05040	0.22	-0.2
1,113,731	-		RR42_RS05040	0.22	+0.5
1,113,772	+		RR42_RS05040	0.24	+0.2
1,113,773	-		RR42_RS05040	0.25	+0.1
1,114,109	+		RR42_RS05040	0.42	-0.8
1,114,156	+		RR42_RS05040	0.44	-0.9
1,114,156	+		RR42_RS05040	0.44	+0.8
1,114,156	+		RR42_RS05040	0.44	-1.0
1,114,157	-		RR42_RS05040	0.44	+0.5
1,114,157	-		RR42_RS05040	0.44	+0.4
1,114,157	-		RR42_RS05040	0.44	+0.3
1,114,160	+		RR42_RS05040	0.44	-0.8
1,114,160	+		RR42_RS05040	0.44	-0.6
1,114,160	+		RR42_RS05040	0.44	-2.1
1,114,160	+		RR42_RS05040	0.44	-0.2
1,114,161	-		RR42_RS05040	0.44	+0.2
1,114,211	+		RR42_RS05040	0.47	+0.9
1,114,211	+		RR42_RS05040	0.47	-0.1
1,114,211	+		RR42_RS05040	0.47	+0.7
1,114,211	+		RR42_RS05040	0.47	+1.2
1,114,211	+		RR42_RS05040	0.47	+0.1
1,114,212	-		RR42_RS05040	0.47	+0.9
1,114,212	-		RR42_RS05040	0.47	-0.4
1,114,212	-		RR42_RS05040	0.47	+0.7
1,114,256	+		RR42_RS05040	0.49	-1.6
1,114,257	-		RR42_RS05040	0.49	+0.3
1,114,331	+		RR42_RS05040	0.53	+0.4
1,114,332	-		RR42_RS05040	0.53	+0.5
1,114,332	-		RR42_RS05040	0.53	+1.6
1,114,332	-		RR42_RS05040	0.53	-1.1
1,114,332	-		RR42_RS05040	0.53	-1.3
1,114,332	-		RR42_RS05040	0.53	-0.2
1,114,448	+		RR42_RS05040	0.59	-0.7
1,114,448	+		RR42_RS05040	0.59	-0.3
1,114,448	+		RR42_RS05040	0.59	+0.1
1,114,448	+		RR42_RS05040	0.59	-0.7
1,114,448	+		RR42_RS05040	0.59	+1.6
1,114,448	+		RR42_RS05040	0.59	+1.0
1,114,448	+		RR42_RS05040	0.59	+1.1
1,114,449	-		RR42_RS05040	0.59	+0.6
1,114,449	-		RR42_RS05040	0.59	-1.3
1,114,449	-		RR42_RS05040	0.59	+0.5
1,114,449	-		RR42_RS05040	0.59	+0.4
1,114,449	-		RR42_RS05040	0.59	+0.4
1,114,514	+		RR42_RS05040	0.62	+0.7
1,114,514	+		RR42_RS05040	0.62	-1.5
1,114,515	-		RR42_RS05040	0.62	+2.6
1,114,655	+		RR42_RS05040	0.69	+0.7
1,114,655	+		RR42_RS05040	0.69	+2.4
1,114,656	-		RR42_RS05040	0.69	-0.1
1,114,656	-		RR42_RS05040	0.69	+0.1
1,114,656	-		RR42_RS05040	0.69	+0.8
1,114,706	+		RR42_RS05040	0.72	-1.2
1,114,707	-		RR42_RS05040	0.72	-0.9
1,114,707	-		RR42_RS05040	0.72	-0.7
1,114,884	-		RR42_RS05040	0.81	+0.8
1,114,884	-		RR42_RS05040	0.81	+0.7
1,114,926	-		RR42_RS05040	0.83	-0.6
1,114,929	+		RR42_RS05040	0.83	+0.8
1,115,179	+				+1.0
1,115,179	+				-0.6
1,115,251	+				+0.9
1,115,251	+				-0.9
1,115,251	+				+1.2
1,115,252	-				+0.5
1,115,252	-				+0.2
1,115,264	+				-0.3
1,115,264	+				-1.8
1,115,322	-				+0.4
1,115,357	+				-1.4
1,115,357	+				+0.2
1,115,357	+				+0.3
1,115,358	-				+1.1
1,115,358	-				-0.3
1,115,468	+				+0.9
1,115,468	+				+0.5
1,115,468	+				-2.0
1,115,517	-				-0.5
1,115,582	+		RR42_RS05045	0.12	-1.4
1,115,582	+		RR42_RS05045	0.12	+1.8
1,115,744	+				-0.2
1,115,745	-		RR42_RS05045	0.41	-0.2
1,115,745	-		RR42_RS05045	0.41	+0.2
1,115,745	-		RR42_RS05045	0.41	+0.8
1,115,847	-		RR42_RS05045	0.59	+1.5
1,116,044	+				-1.4
1,116,068	+				+1.8
1,116,186	-				+1.8
1,116,186	-				-0.5