Experiment: R2A with Zinc 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04050 and RR42_RS04055 are separated by 255 nucleotides RR42_RS04055 and RR42_RS04060 are separated by 593 nucleotides RR42_RS04060 and RR42_RS04065 are separated by 148 nucleotides
RR42_RS04050: RR42_RS04050 - Crp/Fnr family transcriptional regulator, at 897,306 to 898,028
_RS04050
RR42_RS04055: RR42_RS04055 - hypothetical protein, at 898,284 to 898,745
_RS04055
RR42_RS04060: RR42_RS04060 - hypothetical protein, at 899,339 to 899,554
_RS04060
RR42_RS04065: RR42_RS04065 - LysR family transcriptional regulator, at 899,703 to 900,566
_RS04065
Position (kb)
898
899 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 897.433 kb on - strand, within RR42_RS04050 at 897.881 kb on + strand, within RR42_RS04050 at 897.973 kb on + strand at 898.026 kb on + strand at 898.027 kb on - strand at 898.063 kb on - strand at 898.242 kb on - strand at 898.243 kb on + strand at 898.243 kb on + strand at 898.545 kb on + strand, within RR42_RS04055 at 898.546 kb on - strand, within RR42_RS04055 at 898.778 kb on + strand at 898.779 kb on - strand at 898.779 kb on - strand at 898.820 kb on + strand at 898.821 kb on - strand at 898.821 kb on - strand at 898.859 kb on + strand at 898.875 kb on + strand at 899.071 kb on + strand at 899.072 kb on - strand at 899.212 kb on + strand at 899.212 kb on + strand at 899.212 kb on + strand at 899.212 kb on + strand at 899.213 kb on - strand at 899.213 kb on - strand at 899.213 kb on - strand at 899.242 kb on + strand at 899.242 kb on + strand at 899.450 kb on + strand, within RR42_RS04060 at 899.451 kb on - strand, within RR42_RS04060 at 899.457 kb on - strand, within RR42_RS04060 at 899.519 kb on + strand, within RR42_RS04060 at 899.673 kb on + strand at 899.682 kb on + strand at 899.717 kb on + strand at 899.718 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Zinc 0.1 mM remove 897,433 - RR42_RS04050 0.18 -1.4 897,881 + RR42_RS04050 0.80 -0.2 897,973 + -1.2 898,026 + +0.3 898,027 - -0.2 898,063 - -1.8 898,242 - +0.0 898,243 + +0.6 898,243 + +0.6 898,545 + RR42_RS04055 0.56 -0.5 898,546 - RR42_RS04055 0.57 +1.0 898,778 + +2.2 898,779 - +0.3 898,779 - +1.5 898,820 + +0.3 898,821 - +0.5 898,821 - -1.8 898,859 + +1.9 898,875 + +1.0 899,071 + -0.6 899,072 - -0.9 899,212 + -0.1 899,212 + -0.1 899,212 + +1.9 899,212 + -0.5 899,213 - +0.5 899,213 - +0.4 899,213 - +1.3 899,242 + +1.1 899,242 + -1.8 899,450 + RR42_RS04060 0.51 -0.1 899,451 - RR42_RS04060 0.52 -0.0 899,457 - RR42_RS04060 0.55 +0.3 899,519 + RR42_RS04060 0.83 -0.8 899,673 + -0.5 899,682 + -0.1 899,717 + -1.3 899,718 - +0.3
Or see this region's nucleotide sequence