Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03895

Experiment: R2A with Zinc 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03885 and RR42_RS03890 overlap by 8 nucleotidesRR42_RS03890 and RR42_RS03895 overlap by 4 nucleotidesRR42_RS03895 and RR42_RS03900 are separated by 29 nucleotides RR42_RS03885: RR42_RS03885 - mammalian cell entry protein, at 856,680 to 858,311 _RS03885 RR42_RS03890: RR42_RS03890 - paraquat-inducible protein A, at 858,304 to 859,038 _RS03890 RR42_RS03895: RR42_RS03895 - paraquat-inducible protein A, at 859,035 to 859,667 _RS03895 RR42_RS03900: RR42_RS03900 - membrane protein, at 859,697 to 860,821 _RS03900 Position (kb) 859 860Strain fitness (log2 ratio) -2 -1 0 1at 858.300 kb on + strandat 858.301 kb on - strandat 858.318 kb on + strandat 858.319 kb on - strandat 858.319 kb on - strandat 858.515 kb on + strand, within RR42_RS03890at 858.661 kb on + strand, within RR42_RS03890at 858.661 kb on + strand, within RR42_RS03890at 858.662 kb on - strand, within RR42_RS03890at 858.665 kb on + strand, within RR42_RS03890at 858.665 kb on + strand, within RR42_RS03890at 858.665 kb on + strand, within RR42_RS03890at 858.666 kb on - strand, within RR42_RS03890at 858.750 kb on - strand, within RR42_RS03890at 859.300 kb on + strand, within RR42_RS03895at 859.301 kb on - strand, within RR42_RS03895at 859.456 kb on + strand, within RR42_RS03895at 859.516 kb on + strand, within RR42_RS03895at 859.517 kb on - strand, within RR42_RS03895at 859.844 kb on - strand, within RR42_RS03900at 860.022 kb on + strand, within RR42_RS03900at 860.089 kb on + strand, within RR42_RS03900at 860.090 kb on - strand, within RR42_RS03900at 860.184 kb on + strand, within RR42_RS03900at 860.184 kb on + strand, within RR42_RS03900at 860.299 kb on - strand, within RR42_RS03900at 860.464 kb on - strand, within RR42_RS03900at 860.464 kb on - strand, within RR42_RS03900at 860.583 kb on + strand, within RR42_RS03900

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Zinc 0.1 mM
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858,300 + -0.1
858,301 - +0.3
858,318 + +0.4
858,319 - -0.2
858,319 - -1.3
858,515 + RR42_RS03890 0.29 -0.4
858,661 + RR42_RS03890 0.49 +1.0
858,661 + RR42_RS03890 0.49 -1.5
858,662 - RR42_RS03890 0.49 -1.0
858,665 + RR42_RS03890 0.49 -1.9
858,665 + RR42_RS03890 0.49 +0.7
858,665 + RR42_RS03890 0.49 +1.0
858,666 - RR42_RS03890 0.49 -1.3
858,750 - RR42_RS03890 0.61 +0.1
859,300 + RR42_RS03895 0.42 +0.7
859,301 - RR42_RS03895 0.42 -1.6
859,456 + RR42_RS03895 0.67 -1.5
859,516 + RR42_RS03895 0.76 -1.6
859,517 - RR42_RS03895 0.76 -0.7
859,844 - RR42_RS03900 0.13 -0.4
860,022 + RR42_RS03900 0.29 -0.4
860,089 + RR42_RS03900 0.35 -1.0
860,090 - RR42_RS03900 0.35 -0.3
860,184 + RR42_RS03900 0.43 -0.7
860,184 + RR42_RS03900 0.43 -0.7
860,299 - RR42_RS03900 0.54 -0.5
860,464 - RR42_RS03900 0.68 +0.7
860,464 - RR42_RS03900 0.68 -0.2
860,583 + RR42_RS03900 0.79 -0.1

Or see this region's nucleotide sequence