Experiment: R2A with Zinc 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02865 and RR42_RS02870 are separated by 307 nucleotides RR42_RS02870 and RR42_RS02875 are separated by 33 nucleotides
RR42_RS02865: RR42_RS02865 - chloride channel protein, at 638,142 to 639,830
_RS02865
RR42_RS02870: RR42_RS02870 - RNA helicase, at 640,138 to 641,826
_RS02870
RR42_RS02875: RR42_RS02875 - serine/threonine protein kinase, at 641,860 to 642,921
_RS02875
Position (kb) 640
641
642 Strain fitness (log2 ratio) -2
-1
0
1 at 639.195 kb on + strand, within RR42_RS02865 at 639.196 kb on - strand, within RR42_RS02865 at 639.196 kb on - strand, within RR42_RS02865 at 639.196 kb on - strand, within RR42_RS02865 at 639.196 kb on - strand, within RR42_RS02865 at 639.196 kb on - strand, within RR42_RS02865 at 639.557 kb on + strand, within RR42_RS02865 at 639.557 kb on + strand, within RR42_RS02865 at 639.558 kb on - strand, within RR42_RS02865 at 639.558 kb on - strand, within RR42_RS02865 at 639.559 kb on + strand, within RR42_RS02865 at 639.559 kb on + strand, within RR42_RS02865 at 639.560 kb on - strand, within RR42_RS02865 at 639.678 kb on + strand at 639.689 kb on + strand at 639.789 kb on - strand at 639.996 kb on - strand at 640.000 kb on + strand at 640.001 kb on - strand at 640.173 kb on + strand at 640.173 kb on + strand at 640.174 kb on - strand at 640.174 kb on - strand at 640.200 kb on + strand at 640.200 kb on + strand at 640.200 kb on + strand at 640.200 kb on + strand at 640.201 kb on - strand at 640.201 kb on - strand at 640.201 kb on - strand at 640.201 kb on - strand at 640.201 kb on - strand at 640.437 kb on + strand, within RR42_RS02870 at 640.441 kb on + strand, within RR42_RS02870 at 640.441 kb on + strand, within RR42_RS02870 at 640.442 kb on - strand, within RR42_RS02870 at 640.792 kb on - strand, within RR42_RS02870 at 640.823 kb on - strand, within RR42_RS02870 at 641.107 kb on + strand, within RR42_RS02870 at 641.107 kb on + strand, within RR42_RS02870 at 641.108 kb on - strand, within RR42_RS02870 at 641.108 kb on - strand, within RR42_RS02870 at 641.108 kb on - strand, within RR42_RS02870 at 641.134 kb on + strand, within RR42_RS02870 at 641.134 kb on + strand, within RR42_RS02870 at 641.135 kb on - strand, within RR42_RS02870 at 641.135 kb on - strand, within RR42_RS02870 at 641.824 kb on + strand at 641.858 kb on + strand at 641.858 kb on + strand at 641.858 kb on + strand at 641.859 kb on - strand at 641.932 kb on + strand at 642.015 kb on + strand, within RR42_RS02875 at 642.015 kb on + strand, within RR42_RS02875 at 642.015 kb on + strand, within RR42_RS02875 at 642.015 kb on + strand, within RR42_RS02875 at 642.015 kb on + strand, within RR42_RS02875 at 642.015 kb on + strand, within RR42_RS02875 at 642.015 kb on + strand, within RR42_RS02875 at 642.016 kb on - strand, within RR42_RS02875 at 642.016 kb on - strand, within RR42_RS02875 at 642.016 kb on - strand, within RR42_RS02875 at 642.019 kb on + strand, within RR42_RS02875 at 642.019 kb on + strand, within RR42_RS02875 at 642.019 kb on + strand, within RR42_RS02875 at 642.019 kb on + strand, within RR42_RS02875 at 642.019 kb on + strand, within RR42_RS02875 at 642.019 kb on + strand, within RR42_RS02875 at 642.020 kb on - strand, within RR42_RS02875 at 642.020 kb on - strand, within RR42_RS02875 at 642.079 kb on + strand, within RR42_RS02875 at 642.271 kb on - strand, within RR42_RS02875 at 642.331 kb on + strand, within RR42_RS02875 at 642.405 kb on + strand, within RR42_RS02875 at 642.405 kb on + strand, within RR42_RS02875 at 642.406 kb on - strand, within RR42_RS02875 at 642.406 kb on - strand, within RR42_RS02875 at 642.406 kb on - strand, within RR42_RS02875 at 642.406 kb on - strand, within RR42_RS02875 at 642.406 kb on - strand, within RR42_RS02875 at 642.604 kb on - strand, within RR42_RS02875 at 642.697 kb on + strand, within RR42_RS02875 at 642.698 kb on - strand, within RR42_RS02875
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Zinc 0.1 mM remove 639,195 + RR42_RS02865 0.62 +0.1 639,196 - RR42_RS02865 0.62 -0.0 639,196 - RR42_RS02865 0.62 +0.3 639,196 - RR42_RS02865 0.62 -1.5 639,196 - RR42_RS02865 0.62 -0.5 639,196 - RR42_RS02865 0.62 -2.2 639,557 + RR42_RS02865 0.84 +0.2 639,557 + RR42_RS02865 0.84 -1.0 639,558 - RR42_RS02865 0.84 -0.7 639,558 - RR42_RS02865 0.84 +1.4 639,559 + RR42_RS02865 0.84 +0.3 639,559 + RR42_RS02865 0.84 -1.6 639,560 - RR42_RS02865 0.84 -2.0 639,678 + -0.9 639,689 + +1.1 639,789 - -0.9 639,996 - -1.2 640,000 + +1.4 640,001 - -0.5 640,173 + -1.0 640,173 + +0.1 640,174 - +1.5 640,174 - -1.6 640,200 + -0.3 640,200 + +0.1 640,200 + -0.8 640,200 + -1.3 640,201 - +0.1 640,201 - -1.6 640,201 - -0.4 640,201 - -0.3 640,201 - +0.4 640,437 + RR42_RS02870 0.18 +1.3 640,441 + RR42_RS02870 0.18 -1.6 640,441 + RR42_RS02870 0.18 -2.3 640,442 - RR42_RS02870 0.18 -0.4 640,792 - RR42_RS02870 0.39 +1.0 640,823 - RR42_RS02870 0.41 -0.5 641,107 + RR42_RS02870 0.57 +0.6 641,107 + RR42_RS02870 0.57 -0.6 641,108 - RR42_RS02870 0.57 -2.4 641,108 - RR42_RS02870 0.57 -1.3 641,108 - RR42_RS02870 0.57 -1.7 641,134 + RR42_RS02870 0.59 +0.7 641,134 + RR42_RS02870 0.59 +0.6 641,135 - RR42_RS02870 0.59 -0.8 641,135 - RR42_RS02870 0.59 -1.8 641,824 + -0.9 641,858 + -1.0 641,858 + -0.3 641,858 + +0.7 641,859 - -0.9 641,932 + -0.6 642,015 + RR42_RS02875 0.15 -1.7 642,015 + RR42_RS02875 0.15 -0.4 642,015 + RR42_RS02875 0.15 -0.2 642,015 + RR42_RS02875 0.15 -1.3 642,015 + RR42_RS02875 0.15 -1.0 642,015 + RR42_RS02875 0.15 -1.3 642,015 + RR42_RS02875 0.15 +0.2 642,016 - RR42_RS02875 0.15 -1.0 642,016 - RR42_RS02875 0.15 -1.4 642,016 - RR42_RS02875 0.15 -0.3 642,019 + RR42_RS02875 0.15 -0.2 642,019 + RR42_RS02875 0.15 -0.2 642,019 + RR42_RS02875 0.15 -0.0 642,019 + RR42_RS02875 0.15 +0.5 642,019 + RR42_RS02875 0.15 -0.8 642,019 + RR42_RS02875 0.15 -1.5 642,020 - RR42_RS02875 0.15 -0.8 642,020 - RR42_RS02875 0.15 -0.5 642,079 + RR42_RS02875 0.21 -0.3 642,271 - RR42_RS02875 0.39 -1.2 642,331 + RR42_RS02875 0.44 +0.2 642,405 + RR42_RS02875 0.51 -1.2 642,405 + RR42_RS02875 0.51 -0.0 642,406 - RR42_RS02875 0.51 -0.6 642,406 - RR42_RS02875 0.51 -0.7 642,406 - RR42_RS02875 0.51 +1.0 642,406 - RR42_RS02875 0.51 -1.2 642,406 - RR42_RS02875 0.51 -0.1 642,604 - RR42_RS02875 0.70 -1.4 642,697 + RR42_RS02875 0.79 -1.2 642,698 - RR42_RS02875 0.79 -1.1
Or see this region's nucleotide sequence