Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2347 and Pf1N1B4_2348 are separated by 27 nucleotides Pf1N1B4_2348 and Pf1N1B4_2349 are separated by 99 nucleotides Pf1N1B4_2349 and Pf1N1B4_2350 overlap by 1 nucleotides
Pf1N1B4_2347 - Aspartate carbamoyltransferase (EC 2.1.3.2), at 2,662,409 to 2,663,413
_2347
Pf1N1B4_2348 - Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR, at 2,663,441 to 2,663,944
_2348
Pf1N1B4_2349 - Putative Holliday junction resolvase YggF, at 2,664,044 to 2,664,481
_2349
Pf1N1B4_2350 - UPF0301 protein YqgE, at 2,664,481 to 2,665,053
_2350
Position (kb)
2663
2664 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2662.497 kb on + strand at 2663.433 kb on - strand at 2663.443 kb on - strand at 2663.580 kb on - strand, within Pf1N1B4_2348 at 2663.580 kb on - strand, within Pf1N1B4_2348 at 2663.580 kb on - strand, within Pf1N1B4_2348 at 2663.608 kb on - strand, within Pf1N1B4_2348 at 2663.718 kb on - strand, within Pf1N1B4_2348 at 2663.718 kb on - strand, within Pf1N1B4_2348 at 2663.718 kb on - strand, within Pf1N1B4_2348 at 2663.718 kb on - strand, within Pf1N1B4_2348 at 2663.718 kb on - strand, within Pf1N1B4_2348 at 2663.718 kb on - strand, within Pf1N1B4_2348 at 2663.718 kb on - strand, within Pf1N1B4_2348 at 2663.718 kb on - strand, within Pf1N1B4_2348 at 2663.718 kb on - strand, within Pf1N1B4_2348 at 2663.854 kb on - strand, within Pf1N1B4_2348 at 2663.854 kb on - strand, within Pf1N1B4_2348 at 2663.886 kb on + strand, within Pf1N1B4_2348 at 2663.887 kb on - strand, within Pf1N1B4_2348 at 2663.887 kb on - strand, within Pf1N1B4_2348 at 2663.887 kb on - strand, within Pf1N1B4_2348 at 2663.887 kb on - strand, within Pf1N1B4_2348 at 2663.887 kb on - strand, within Pf1N1B4_2348 at 2663.887 kb on - strand, within Pf1N1B4_2348 at 2663.887 kb on - strand, within Pf1N1B4_2348 at 2663.887 kb on - strand, within Pf1N1B4_2348 at 2663.887 kb on - strand, within Pf1N1B4_2348 at 2663.887 kb on - strand, within Pf1N1B4_2348 at 2663.887 kb on - strand, within Pf1N1B4_2348 at 2663.887 kb on - strand, within Pf1N1B4_2348 at 2664.001 kb on - strand at 2664.001 kb on - strand at 2664.001 kb on - strand at 2664.005 kb on - strand at 2664.005 kb on - strand at 2664.035 kb on + strand at 2664.035 kb on + strand at 2664.035 kb on + strand at 2664.035 kb on + strand at 2664.035 kb on + strand at 2664.036 kb on - strand at 2664.036 kb on - strand at 2664.554 kb on - strand, within Pf1N1B4_2350 at 2664.554 kb on - strand, within Pf1N1B4_2350
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 2,662,497 + +1.3 2,663,433 - +0.7 2,663,443 - +0.5 2,663,580 - Pf1N1B4_2348 0.28 -1.3 2,663,580 - Pf1N1B4_2348 0.28 -1.0 2,663,580 - Pf1N1B4_2348 0.28 -1.2 2,663,608 - Pf1N1B4_2348 0.33 -1.1 2,663,718 - Pf1N1B4_2348 0.55 +1.2 2,663,718 - Pf1N1B4_2348 0.55 -1.8 2,663,718 - Pf1N1B4_2348 0.55 -2.9 2,663,718 - Pf1N1B4_2348 0.55 -1.6 2,663,718 - Pf1N1B4_2348 0.55 -1.1 2,663,718 - Pf1N1B4_2348 0.55 +0.3 2,663,718 - Pf1N1B4_2348 0.55 +0.4 2,663,718 - Pf1N1B4_2348 0.55 -0.4 2,663,718 - Pf1N1B4_2348 0.55 -0.5 2,663,854 - Pf1N1B4_2348 0.82 -0.6 2,663,854 - Pf1N1B4_2348 0.82 -0.8 2,663,886 + Pf1N1B4_2348 0.88 -0.3 2,663,887 - Pf1N1B4_2348 0.88 +0.5 2,663,887 - Pf1N1B4_2348 0.88 -2.3 2,663,887 - Pf1N1B4_2348 0.88 +2.3 2,663,887 - Pf1N1B4_2348 0.88 -0.3 2,663,887 - Pf1N1B4_2348 0.88 -1.1 2,663,887 - Pf1N1B4_2348 0.88 -1.2 2,663,887 - Pf1N1B4_2348 0.88 -0.1 2,663,887 - Pf1N1B4_2348 0.88 -0.5 2,663,887 - Pf1N1B4_2348 0.88 +0.0 2,663,887 - Pf1N1B4_2348 0.88 -0.6 2,663,887 - Pf1N1B4_2348 0.88 +0.2 2,663,887 - Pf1N1B4_2348 0.88 +0.3 2,664,001 - +0.3 2,664,001 - +1.2 2,664,001 - -0.8 2,664,005 - +0.2 2,664,005 - -1.1 2,664,035 + +0.7 2,664,035 + -1.1 2,664,035 + -1.7 2,664,035 + +0.7 2,664,035 + -2.6 2,664,036 - -0.6 2,664,036 - +1.0 2,664,554 - Pf1N1B4_2350 0.13 -0.3 2,664,554 - Pf1N1B4_2350 0.13 -1.4
Or see this region's nucleotide sequence