Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS21930 and HSERO_RS21935 are separated by 233 nucleotides HSERO_RS21935 and HSERO_RS21940 are separated by 103 nucleotides HSERO_RS21940 and HSERO_RS21945 are separated by 159 nucleotides HSERO_RS21945 and HSERO_RS21950 are separated by 21 nucleotides
HSERO_RS21930: HSERO_RS21930 - tRNA-Arg, at 5,019,752 to 5,019,827
_RS21930
HSERO_RS21935: HSERO_RS21935 - cytochrome C, at 5,020,061 to 5,020,630
_RS21935
HSERO_RS21940: HSERO_RS21940 - membrane protein, at 5,020,734 to 5,021,459
_RS21940
HSERO_RS21945: HSERO_RS21945 - hypothetical protein, at 5,021,619 to 5,022,050
_RS21945
HSERO_RS21950: HSERO_RS21950 - membrane protein, at 5,022,072 to 5,022,479
_RS21950
Position (kb) 5020
5021
5022 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5019.890 kb on - strand at 5020.016 kb on - strand at 5020.050 kb on - strand at 5020.065 kb on + strand at 5020.073 kb on - strand at 5020.073 kb on - strand at 5020.083 kb on - strand at 5020.229 kb on - strand, within HSERO_RS21935 at 5020.422 kb on - strand, within HSERO_RS21935 at 5020.622 kb on + strand at 5020.721 kb on + strand at 5021.030 kb on - strand, within HSERO_RS21940 at 5021.895 kb on + strand, within HSERO_RS21945 at 5021.905 kb on + strand, within HSERO_RS21945 at 5021.913 kb on - strand, within HSERO_RS21945 at 5021.913 kb on - strand, within HSERO_RS21945 at 5022.009 kb on - strand at 5022.019 kb on - strand at 5022.045 kb on + strand at 5022.106 kb on + strand at 5022.157 kb on + strand, within HSERO_RS21950 at 5022.169 kb on - strand, within HSERO_RS21950 at 5022.192 kb on - strand, within HSERO_RS21950 at 5022.197 kb on - strand, within HSERO_RS21950 at 5022.203 kb on - strand, within HSERO_RS21950 at 5022.359 kb on + strand, within HSERO_RS21950
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 5,019,890 - +0.3 5,020,016 - +2.2 5,020,050 - +0.2 5,020,065 + -1.0 5,020,073 - +0.4 5,020,073 - -0.8 5,020,083 - -0.2 5,020,229 - HSERO_RS21935 0.29 -1.1 5,020,422 - HSERO_RS21935 0.63 -1.6 5,020,622 + -0.5 5,020,721 + +0.0 5,021,030 - HSERO_RS21940 0.41 +0.4 5,021,895 + HSERO_RS21945 0.64 +0.9 5,021,905 + HSERO_RS21945 0.66 -0.9 5,021,913 - HSERO_RS21945 0.68 -0.4 5,021,913 - HSERO_RS21945 0.68 -1.2 5,022,009 - -0.1 5,022,019 - -0.9 5,022,045 + +1.5 5,022,106 + -0.5 5,022,157 + HSERO_RS21950 0.21 -3.2 5,022,169 - HSERO_RS21950 0.24 -1.2 5,022,192 - HSERO_RS21950 0.29 -1.3 5,022,197 - HSERO_RS21950 0.31 -0.3 5,022,203 - HSERO_RS21950 0.32 -1.4 5,022,359 + HSERO_RS21950 0.70 +1.0
Or see this region's nucleotide sequence