Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_11745

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_11740 and AO356_11745 are separated by 327 nucleotidesAO356_11745 and AO356_11750 overlap by 8 nucleotides AO356_11740: AO356_11740 - glucosamine--fructose-6-phosphate aminotransferase, at 2,658,466 to 2,660,298 _11740 AO356_11745: AO356_11745 - hypothetical protein, at 2,660,626 to 2,661,084 _11745 AO356_11750: AO356_11750 - toxin HipA, at 2,661,077 to 2,662,333 _11750 Position (kb) 2660 2661 2662Strain fitness (log2 ratio) -2 -1 0 1 2at 2660.333 kb on + strandat 2660.333 kb on + strandat 2660.333 kb on + strandat 2660.333 kb on + strandat 2660.333 kb on + strandat 2660.333 kb on + strandat 2660.333 kb on + strandat 2660.333 kb on + strandat 2660.334 kb on - strandat 2660.334 kb on - strandat 2660.334 kb on - strandat 2660.334 kb on - strandat 2660.334 kb on - strandat 2660.334 kb on - strandat 2660.334 kb on - strandat 2660.334 kb on - strandat 2660.334 kb on - strandat 2660.334 kb on - strandat 2660.334 kb on - strandat 2660.334 kb on - strandat 2660.334 kb on - strandat 2660.337 kb on + strandat 2660.337 kb on + strandat 2660.337 kb on + strandat 2660.338 kb on - strandat 2660.338 kb on - strandat 2660.338 kb on - strandat 2660.338 kb on - strandat 2660.356 kb on + strandat 2660.357 kb on - strandat 2660.366 kb on - strandat 2660.399 kb on + strandat 2660.400 kb on - strandat 2660.416 kb on + strandat 2660.416 kb on + strandat 2660.416 kb on + strandat 2660.417 kb on - strandat 2660.417 kb on - strandat 2660.417 kb on - strandat 2660.813 kb on - strand, within AO356_11745at 2660.813 kb on - strand, within AO356_11745at 2661.065 kb on + strandat 2661.065 kb on + strandat 2661.098 kb on + strandat 2661.172 kb on + strandat 2661.173 kb on - strandat 2661.173 kb on - strandat 2661.248 kb on + strand, within AO356_11750at 2661.249 kb on - strand, within AO356_11750at 2661.292 kb on - strand, within AO356_11750at 2661.369 kb on + strand, within AO356_11750at 2661.402 kb on - strand, within AO356_11750at 2661.402 kb on - strand, within AO356_11750at 2661.402 kb on - strand, within AO356_11750at 2661.402 kb on - strand, within AO356_11750at 2661.402 kb on - strand, within AO356_11750at 2661.402 kb on - strand, within AO356_11750at 2661.402 kb on - strand, within AO356_11750at 2661.645 kb on + strand, within AO356_11750at 2661.645 kb on + strand, within AO356_11750at 2661.645 kb on + strand, within AO356_11750at 2661.645 kb on + strand, within AO356_11750at 2661.645 kb on + strand, within AO356_11750at 2661.645 kb on + strand, within AO356_11750at 2661.646 kb on - strand, within AO356_11750at 2661.646 kb on - strand, within AO356_11750at 2661.646 kb on - strand, within AO356_11750at 2661.646 kb on - strand, within AO356_11750at 2661.646 kb on - strand, within AO356_11750at 2661.646 kb on - strand, within AO356_11750at 2661.646 kb on - strand, within AO356_11750at 2661.648 kb on + strand, within AO356_11750at 2661.648 kb on + strand, within AO356_11750at 2661.648 kb on + strand, within AO356_11750at 2661.648 kb on + strand, within AO356_11750at 2661.648 kb on + strand, within AO356_11750at 2661.648 kb on + strand, within AO356_11750at 2661.648 kb on + strand, within AO356_11750at 2661.648 kb on + strand, within AO356_11750at 2661.648 kb on + strand, within AO356_11750at 2661.648 kb on + strand, within AO356_11750at 2661.648 kb on + strand, within AO356_11750at 2661.648 kb on + strand, within AO356_11750at 2661.648 kb on + strand, within AO356_11750at 2661.648 kb on + strand, within AO356_11750at 2661.649 kb on - strand, within AO356_11750at 2661.649 kb on - strand, within AO356_11750at 2661.649 kb on - strand, within AO356_11750at 2661.649 kb on - strand, within AO356_11750at 2661.649 kb on - strand, within AO356_11750at 2661.649 kb on - strand, within AO356_11750at 2661.649 kb on - strand, within AO356_11750at 2661.649 kb on - strand, within AO356_11750at 2661.649 kb on - strand, within AO356_11750at 2661.649 kb on - strand, within AO356_11750at 2661.649 kb on - strand, within AO356_11750at 2661.649 kb on - strand, within AO356_11750at 2661.649 kb on - strand, within AO356_11750at 2661.649 kb on - strand, within AO356_11750at 2661.649 kb on - strand, within AO356_11750at 2661.649 kb on - strand, within AO356_11750at 2661.649 kb on - strand, within AO356_11750at 2661.688 kb on + strand, within AO356_11750at 2661.688 kb on + strand, within AO356_11750at 2661.689 kb on - strand, within AO356_11750at 2661.691 kb on + strand, within AO356_11750at 2661.691 kb on + strand, within AO356_11750at 2661.691 kb on + strand, within AO356_11750at 2661.691 kb on + strand, within AO356_11750at 2661.692 kb on - strand, within AO356_11750at 2661.758 kb on + strand, within AO356_11750at 2661.758 kb on + strand, within AO356_11750at 2661.758 kb on + strand, within AO356_11750at 2661.758 kb on + strand, within AO356_11750at 2661.758 kb on + strand, within AO356_11750at 2661.758 kb on + strand, within AO356_11750at 2661.758 kb on + strand, within AO356_11750at 2661.759 kb on - strand, within AO356_11750at 2661.759 kb on - strand, within AO356_11750at 2661.759 kb on - strand, within AO356_11750at 2661.759 kb on - strand, within AO356_11750at 2661.759 kb on - strand, within AO356_11750at 2661.759 kb on - strand, within AO356_11750at 2661.786 kb on - strand, within AO356_11750at 2661.786 kb on - strand, within AO356_11750at 2661.797 kb on + strand, within AO356_11750at 2661.797 kb on + strand, within AO356_11750at 2661.798 kb on - strand, within AO356_11750at 2661.815 kb on - strand, within AO356_11750at 2661.815 kb on - strand, within AO356_11750at 2661.917 kb on + strand, within AO356_11750at 2661.917 kb on + strand, within AO356_11750at 2661.917 kb on + strand, within AO356_11750at 2661.917 kb on + strand, within AO356_11750at 2661.917 kb on + strand, within AO356_11750at 2661.918 kb on - strand, within AO356_11750at 2661.918 kb on - strand, within AO356_11750at 2661.918 kb on - strand, within AO356_11750at 2661.918 kb on - strand, within AO356_11750at 2661.936 kb on + strand, within AO356_11750at 2661.936 kb on + strand, within AO356_11750at 2661.936 kb on + strand, within AO356_11750at 2661.936 kb on + strand, within AO356_11750at 2661.936 kb on + strand, within AO356_11750at 2661.937 kb on - strand, within AO356_11750at 2661.937 kb on - strand, within AO356_11750at 2661.937 kb on - strand, within AO356_11750at 2661.937 kb on - strand, within AO356_11750at 2661.937 kb on - strand, within AO356_11750at 2661.937 kb on - strand, within AO356_11750at 2661.937 kb on - strand, within AO356_11750at 2662.032 kb on + strand, within AO356_11750at 2662.032 kb on + strand, within AO356_11750at 2662.032 kb on + strand, within AO356_11750at 2662.032 kb on + strand, within AO356_11750at 2662.033 kb on - strand, within AO356_11750at 2662.033 kb on - strand, within AO356_11750at 2662.033 kb on - strand, within AO356_11750at 2662.050 kb on + strand, within AO356_11750at 2662.050 kb on + strand, within AO356_11750at 2662.050 kb on + strand, within AO356_11750at 2662.051 kb on - strand, within AO356_11750

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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2,660,333 + -0.2
2,660,333 + +0.0
2,660,333 + -0.3
2,660,333 + +0.1
2,660,333 + -0.2
2,660,333 + -0.0
2,660,333 + +0.9
2,660,333 + -0.0
2,660,334 - +1.1
2,660,334 - -0.9
2,660,334 - +0.4
2,660,334 - -0.3
2,660,334 - +0.1
2,660,334 - -0.7
2,660,334 - -0.1
2,660,334 - +0.6
2,660,334 - -0.4
2,660,334 - +0.1
2,660,334 - -0.0
2,660,334 - -0.1
2,660,334 - +0.4
2,660,337 + +0.9
2,660,337 + +0.4
2,660,337 + +0.4
2,660,338 - +0.2
2,660,338 - -0.1
2,660,338 - +0.2
2,660,338 - +0.4
2,660,356 + +0.6
2,660,357 - +0.2
2,660,366 - +0.3
2,660,399 + -0.0
2,660,400 - -0.2
2,660,416 + -0.3
2,660,416 + +1.6
2,660,416 + +0.1
2,660,417 - +0.5
2,660,417 - -0.6
2,660,417 - -0.2
2,660,813 - AO356_11745 0.41 -0.3
2,660,813 - AO356_11745 0.41 +1.4
2,661,065 + +0.6
2,661,065 + +0.4
2,661,098 + +0.9
2,661,172 + -0.7
2,661,173 - +0.4
2,661,173 - +0.3
2,661,248 + AO356_11750 0.14 -0.4
2,661,249 - AO356_11750 0.14 -0.5
2,661,292 - AO356_11750 0.17 +0.1
2,661,369 + AO356_11750 0.23 +0.3
2,661,402 - AO356_11750 0.26 +0.3
2,661,402 - AO356_11750 0.26 +0.2
2,661,402 - AO356_11750 0.26 -1.8
2,661,402 - AO356_11750 0.26 +0.0
2,661,402 - AO356_11750 0.26 +0.6
2,661,402 - AO356_11750 0.26 -0.6
2,661,402 - AO356_11750 0.26 +0.4
2,661,645 + AO356_11750 0.45 +1.1
2,661,645 + AO356_11750 0.45 -0.2
2,661,645 + AO356_11750 0.45 -0.4
2,661,645 + AO356_11750 0.45 -0.9
2,661,645 + AO356_11750 0.45 +0.3
2,661,645 + AO356_11750 0.45 -0.1
2,661,646 - AO356_11750 0.45 +0.5
2,661,646 - AO356_11750 0.45 +0.7
2,661,646 - AO356_11750 0.45 +0.0
2,661,646 - AO356_11750 0.45 -0.9
2,661,646 - AO356_11750 0.45 +1.2
2,661,646 - AO356_11750 0.45 -0.5
2,661,646 - AO356_11750 0.45 +0.5
2,661,648 + AO356_11750 0.45 -1.2
2,661,648 + AO356_11750 0.45 -0.1
2,661,648 + AO356_11750 0.45 +0.1
2,661,648 + AO356_11750 0.45 +0.3
2,661,648 + AO356_11750 0.45 -0.9
2,661,648 + AO356_11750 0.45 +1.0
2,661,648 + AO356_11750 0.45 +0.7
2,661,648 + AO356_11750 0.45 -0.2
2,661,648 + AO356_11750 0.45 +0.8
2,661,648 + AO356_11750 0.45 +0.8
2,661,648 + AO356_11750 0.45 +0.9
2,661,648 + AO356_11750 0.45 +0.6
2,661,648 + AO356_11750 0.45 +0.6
2,661,648 + AO356_11750 0.45 -0.6
2,661,649 - AO356_11750 0.46 +0.0
2,661,649 - AO356_11750 0.46 +0.1
2,661,649 - AO356_11750 0.46 -0.5
2,661,649 - AO356_11750 0.46 -0.2
2,661,649 - AO356_11750 0.46 +1.0
2,661,649 - AO356_11750 0.46 +0.6
2,661,649 - AO356_11750 0.46 -0.6
2,661,649 - AO356_11750 0.46 +0.8
2,661,649 - AO356_11750 0.46 +0.4
2,661,649 - AO356_11750 0.46 +0.7
2,661,649 - AO356_11750 0.46 +0.5
2,661,649 - AO356_11750 0.46 +0.1
2,661,649 - AO356_11750 0.46 -1.3
2,661,649 - AO356_11750 0.46 +1.5
2,661,649 - AO356_11750 0.46 +0.5
2,661,649 - AO356_11750 0.46 -0.3
2,661,649 - AO356_11750 0.46 +0.3
2,661,688 + AO356_11750 0.49 +0.8
2,661,688 + AO356_11750 0.49 -0.1
2,661,689 - AO356_11750 0.49 -1.9
2,661,691 + AO356_11750 0.49 +0.8
2,661,691 + AO356_11750 0.49 +0.3
2,661,691 + AO356_11750 0.49 +0.8
2,661,691 + AO356_11750 0.49 +1.0
2,661,692 - AO356_11750 0.49 +0.0
2,661,758 + AO356_11750 0.54 +0.4
2,661,758 + AO356_11750 0.54 +0.7
2,661,758 + AO356_11750 0.54 +0.7
2,661,758 + AO356_11750 0.54 -0.7
2,661,758 + AO356_11750 0.54 +0.3
2,661,758 + AO356_11750 0.54 +0.8
2,661,758 + AO356_11750 0.54 +1.9
2,661,759 - AO356_11750 0.54 +2.1
2,661,759 - AO356_11750 0.54 -0.5
2,661,759 - AO356_11750 0.54 -0.1
2,661,759 - AO356_11750 0.54 -0.3
2,661,759 - AO356_11750 0.54 -1.9
2,661,759 - AO356_11750 0.54 +0.1
2,661,786 - AO356_11750 0.56 -0.4
2,661,786 - AO356_11750 0.56 +0.5
2,661,797 + AO356_11750 0.57 +0.4
2,661,797 + AO356_11750 0.57 -0.6
2,661,798 - AO356_11750 0.57 +0.3
2,661,815 - AO356_11750 0.59 -0.0
2,661,815 - AO356_11750 0.59 +0.6
2,661,917 + AO356_11750 0.67 +0.7
2,661,917 + AO356_11750 0.67 +0.1
2,661,917 + AO356_11750 0.67 -0.2
2,661,917 + AO356_11750 0.67 +0.2
2,661,917 + AO356_11750 0.67 -1.9
2,661,918 - AO356_11750 0.67 -0.1
2,661,918 - AO356_11750 0.67 +0.8
2,661,918 - AO356_11750 0.67 -1.1
2,661,918 - AO356_11750 0.67 -0.9
2,661,936 + AO356_11750 0.68 +1.0
2,661,936 + AO356_11750 0.68 +0.7
2,661,936 + AO356_11750 0.68 +0.8
2,661,936 + AO356_11750 0.68 +0.3
2,661,936 + AO356_11750 0.68 -0.2
2,661,937 - AO356_11750 0.68 -0.0
2,661,937 - AO356_11750 0.68 +0.5
2,661,937 - AO356_11750 0.68 +1.3
2,661,937 - AO356_11750 0.68 +0.6
2,661,937 - AO356_11750 0.68 +0.2
2,661,937 - AO356_11750 0.68 +0.5
2,661,937 - AO356_11750 0.68 -0.1
2,662,032 + AO356_11750 0.76 +0.7
2,662,032 + AO356_11750 0.76 +0.2
2,662,032 + AO356_11750 0.76 +0.2
2,662,032 + AO356_11750 0.76 -0.6
2,662,033 - AO356_11750 0.76 -0.5
2,662,033 - AO356_11750 0.76 -0.1
2,662,033 - AO356_11750 0.76 -2.7
2,662,050 + AO356_11750 0.77 +0.3
2,662,050 + AO356_11750 0.77 +0.1
2,662,050 + AO356_11750 0.77 +0.1
2,662,051 - AO356_11750 0.77 +0.0

Or see this region's nucleotide sequence