Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06505

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06495 and AO356_06500 are separated by 169 nucleotidesAO356_06500 and AO356_06505 are separated by 56 nucleotidesAO356_06505 and AO356_06510 are separated by 105 nucleotides AO356_06495: AO356_06495 - alpha/beta hydrolase, at 1,437,882 to 1,438,727 _06495 AO356_06500: AO356_06500 - antibiotic biosynthesis monooxygenase, at 1,438,897 to 1,439,274 _06500 AO356_06505: AO356_06505 - pyridine nucleotide-disulfide oxidoreductase, at 1,439,331 to 1,440,224 _06505 AO356_06510: AO356_06510 - TetR family transcriptional regulator, at 1,440,330 to 1,440,959 _06510 Position (kb) 1439 1440 1441Strain fitness (log2 ratio) -2 -1 0 1 2at 1438.408 kb on + strand, within AO356_06495at 1438.408 kb on + strand, within AO356_06495at 1438.408 kb on + strand, within AO356_06495at 1438.409 kb on - strand, within AO356_06495at 1438.409 kb on - strand, within AO356_06495at 1438.688 kb on + strandat 1438.864 kb on + strandat 1438.887 kb on - strandat 1438.887 kb on - strandat 1439.042 kb on + strand, within AO356_06500at 1439.042 kb on + strand, within AO356_06500at 1439.042 kb on + strand, within AO356_06500at 1439.042 kb on + strand, within AO356_06500at 1439.042 kb on + strand, within AO356_06500at 1439.042 kb on + strand, within AO356_06500at 1439.042 kb on + strand, within AO356_06500at 1439.042 kb on + strand, within AO356_06500at 1439.042 kb on + strand, within AO356_06500at 1439.043 kb on - strand, within AO356_06500at 1439.043 kb on - strand, within AO356_06500at 1439.043 kb on - strand, within AO356_06500at 1439.043 kb on - strand, within AO356_06500at 1439.043 kb on - strand, within AO356_06500at 1439.043 kb on - strand, within AO356_06500at 1439.043 kb on - strand, within AO356_06500at 1439.043 kb on - strand, within AO356_06500at 1439.043 kb on - strand, within AO356_06500at 1439.043 kb on - strand, within AO356_06500at 1439.043 kb on - strand, within AO356_06500at 1439.179 kb on + strand, within AO356_06500at 1439.179 kb on + strand, within AO356_06500at 1439.179 kb on + strand, within AO356_06500at 1439.179 kb on + strand, within AO356_06500at 1439.180 kb on - strand, within AO356_06500at 1439.180 kb on - strand, within AO356_06500at 1439.180 kb on - strand, within AO356_06500at 1439.180 kb on - strand, within AO356_06500at 1439.180 kb on - strand, within AO356_06500at 1439.187 kb on + strand, within AO356_06500at 1439.187 kb on + strand, within AO356_06500at 1439.187 kb on + strand, within AO356_06500at 1439.187 kb on + strand, within AO356_06500at 1439.188 kb on - strand, within AO356_06500at 1439.188 kb on - strand, within AO356_06500at 1439.188 kb on - strand, within AO356_06500at 1439.188 kb on - strand, within AO356_06500at 1439.188 kb on - strand, within AO356_06500at 1439.188 kb on - strand, within AO356_06500at 1439.188 kb on - strand, within AO356_06500at 1439.191 kb on + strand, within AO356_06500at 1439.191 kb on + strand, within AO356_06500at 1439.191 kb on + strand, within AO356_06500at 1439.192 kb on - strand, within AO356_06500at 1439.192 kb on - strand, within AO356_06500at 1439.434 kb on + strand, within AO356_06505at 1439.435 kb on - strand, within AO356_06505at 1439.435 kb on - strand, within AO356_06505at 1439.435 kb on - strand, within AO356_06505at 1439.435 kb on - strand, within AO356_06505at 1439.435 kb on - strand, within AO356_06505at 1439.750 kb on - strand, within AO356_06505at 1439.761 kb on + strand, within AO356_06505at 1439.761 kb on + strand, within AO356_06505at 1439.761 kb on + strand, within AO356_06505at 1439.762 kb on - strand, within AO356_06505at 1439.762 kb on - strand, within AO356_06505at 1439.762 kb on - strand, within AO356_06505at 1439.762 kb on - strand, within AO356_06505at 1439.762 kb on - strand, within AO356_06505at 1439.762 kb on - strand, within AO356_06505at 1439.762 kb on - strand, within AO356_06505at 1439.762 kb on - strand, within AO356_06505at 1439.762 kb on - strand, within AO356_06505at 1439.830 kb on + strand, within AO356_06505at 1439.830 kb on + strand, within AO356_06505at 1439.905 kb on + strand, within AO356_06505at 1439.905 kb on + strand, within AO356_06505at 1439.905 kb on + strand, within AO356_06505at 1439.906 kb on - strand, within AO356_06505at 1439.906 kb on - strand, within AO356_06505at 1439.906 kb on - strand, within AO356_06505at 1440.271 kb on + strandat 1440.380 kb on - strandat 1440.472 kb on + strand, within AO356_06510at 1440.489 kb on + strand, within AO356_06510at 1440.489 kb on + strand, within AO356_06510at 1440.489 kb on + strand, within AO356_06510at 1440.489 kb on + strand, within AO356_06510at 1440.490 kb on - strand, within AO356_06510at 1440.490 kb on - strand, within AO356_06510at 1440.490 kb on - strand, within AO356_06510at 1440.570 kb on - strand, within AO356_06510at 1440.570 kb on - strand, within AO356_06510at 1440.735 kb on + strand, within AO356_06510at 1440.735 kb on + strand, within AO356_06510at 1440.735 kb on + strand, within AO356_06510at 1440.736 kb on - strand, within AO356_06510at 1440.736 kb on - strand, within AO356_06510at 1440.736 kb on - strand, within AO356_06510at 1440.736 kb on - strand, within AO356_06510at 1440.859 kb on + strand, within AO356_06510at 1440.912 kb on + strandat 1440.912 kb on + strandat 1440.912 kb on + strandat 1440.913 kb on - strandat 1440.913 kb on - strandat 1440.913 kb on - strandat 1440.913 kb on - strandat 1441.053 kb on + strandat 1441.069 kb on + strandat 1441.069 kb on + strandat 1441.095 kb on + strandat 1441.096 kb on - strandat 1441.096 kb on - strandat 1441.121 kb on + strandat 1441.196 kb on + strandat 1441.196 kb on + strandat 1441.197 kb on - strandat 1441.197 kb on - strandat 1441.197 kb on - strandat 1441.197 kb on - strandat 1441.197 kb on - strandat 1441.197 kb on - strandat 1441.197 kb on - strandat 1441.197 kb on - strandat 1441.197 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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1,438,408 + AO356_06495 0.62 +0.2
1,438,408 + AO356_06495 0.62 +0.4
1,438,408 + AO356_06495 0.62 -0.2
1,438,409 - AO356_06495 0.62 +0.1
1,438,409 - AO356_06495 0.62 +0.8
1,438,688 + +0.4
1,438,864 + -0.0
1,438,887 - -1.6
1,438,887 - -2.6
1,439,042 + AO356_06500 0.38 +1.2
1,439,042 + AO356_06500 0.38 -0.2
1,439,042 + AO356_06500 0.38 +0.5
1,439,042 + AO356_06500 0.38 -1.6
1,439,042 + AO356_06500 0.38 -1.3
1,439,042 + AO356_06500 0.38 -0.1
1,439,042 + AO356_06500 0.38 -0.5
1,439,042 + AO356_06500 0.38 +0.0
1,439,042 + AO356_06500 0.38 +0.1
1,439,043 - AO356_06500 0.39 +0.3
1,439,043 - AO356_06500 0.39 +0.4
1,439,043 - AO356_06500 0.39 +0.6
1,439,043 - AO356_06500 0.39 -0.2
1,439,043 - AO356_06500 0.39 -0.4
1,439,043 - AO356_06500 0.39 +0.3
1,439,043 - AO356_06500 0.39 -0.4
1,439,043 - AO356_06500 0.39 +0.4
1,439,043 - AO356_06500 0.39 +1.2
1,439,043 - AO356_06500 0.39 +0.2
1,439,043 - AO356_06500 0.39 +1.3
1,439,179 + AO356_06500 0.75 +0.2
1,439,179 + AO356_06500 0.75 +0.2
1,439,179 + AO356_06500 0.75 +0.1
1,439,179 + AO356_06500 0.75 +0.1
1,439,180 - AO356_06500 0.75 +0.1
1,439,180 - AO356_06500 0.75 +0.4
1,439,180 - AO356_06500 0.75 +0.0
1,439,180 - AO356_06500 0.75 -0.2
1,439,180 - AO356_06500 0.75 +0.6
1,439,187 + AO356_06500 0.77 -0.5
1,439,187 + AO356_06500 0.77 -0.1
1,439,187 + AO356_06500 0.77 +0.2
1,439,187 + AO356_06500 0.77 +0.8
1,439,188 - AO356_06500 0.77 +1.1
1,439,188 - AO356_06500 0.77 +0.7
1,439,188 - AO356_06500 0.77 -0.0
1,439,188 - AO356_06500 0.77 -0.9
1,439,188 - AO356_06500 0.77 +1.0
1,439,188 - AO356_06500 0.77 +0.1
1,439,188 - AO356_06500 0.77 +0.1
1,439,191 + AO356_06500 0.78 +0.8
1,439,191 + AO356_06500 0.78 +0.4
1,439,191 + AO356_06500 0.78 +0.1
1,439,192 - AO356_06500 0.78 +0.2
1,439,192 - AO356_06500 0.78 -0.2
1,439,434 + AO356_06505 0.12 -0.2
1,439,435 - AO356_06505 0.12 +0.4
1,439,435 - AO356_06505 0.12 -0.1
1,439,435 - AO356_06505 0.12 +0.6
1,439,435 - AO356_06505 0.12 +0.1
1,439,435 - AO356_06505 0.12 +0.5
1,439,750 - AO356_06505 0.47 +0.2
1,439,761 + AO356_06505 0.48 +0.8
1,439,761 + AO356_06505 0.48 +1.2
1,439,761 + AO356_06505 0.48 +0.1
1,439,762 - AO356_06505 0.48 +1.0
1,439,762 - AO356_06505 0.48 +0.3
1,439,762 - AO356_06505 0.48 -0.9
1,439,762 - AO356_06505 0.48 +1.2
1,439,762 - AO356_06505 0.48 +0.5
1,439,762 - AO356_06505 0.48 +2.2
1,439,762 - AO356_06505 0.48 +1.5
1,439,762 - AO356_06505 0.48 +0.4
1,439,762 - AO356_06505 0.48 -0.2
1,439,830 + AO356_06505 0.56 +0.2
1,439,830 + AO356_06505 0.56 -0.2
1,439,905 + AO356_06505 0.64 +0.7
1,439,905 + AO356_06505 0.64 +1.0
1,439,905 + AO356_06505 0.64 +1.4
1,439,906 - AO356_06505 0.64 +0.5
1,439,906 - AO356_06505 0.64 -0.2
1,439,906 - AO356_06505 0.64 -0.5
1,440,271 + +0.1
1,440,380 - +0.9
1,440,472 + AO356_06510 0.23 +0.3
1,440,489 + AO356_06510 0.25 -0.5
1,440,489 + AO356_06510 0.25 +0.1
1,440,489 + AO356_06510 0.25 -0.1
1,440,489 + AO356_06510 0.25 +0.2
1,440,490 - AO356_06510 0.25 -0.8
1,440,490 - AO356_06510 0.25 -0.5
1,440,490 - AO356_06510 0.25 -0.7
1,440,570 - AO356_06510 0.38 +0.8
1,440,570 - AO356_06510 0.38 -0.1
1,440,735 + AO356_06510 0.64 -0.4
1,440,735 + AO356_06510 0.64 -0.2
1,440,735 + AO356_06510 0.64 -2.0
1,440,736 - AO356_06510 0.64 -0.7
1,440,736 - AO356_06510 0.64 -0.3
1,440,736 - AO356_06510 0.64 -0.4
1,440,736 - AO356_06510 0.64 -0.3
1,440,859 + AO356_06510 0.84 +0.2
1,440,912 + +0.4
1,440,912 + -0.1
1,440,912 + -0.8
1,440,913 - +0.4
1,440,913 - -0.4
1,440,913 - -0.9
1,440,913 - +0.9
1,441,053 + +0.2
1,441,069 + +0.1
1,441,069 + +1.2
1,441,095 + +0.8
1,441,096 - +0.8
1,441,096 - +0.5
1,441,121 + +0.5
1,441,196 + -0.3
1,441,196 + +0.3
1,441,197 - -0.1
1,441,197 - +0.2
1,441,197 - +0.5
1,441,197 - -0.6
1,441,197 - +0.0
1,441,197 - -0.3
1,441,197 - +0.1
1,441,197 - +0.3
1,441,197 - -0.2

Or see this region's nucleotide sequence