Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02680

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02675 and AO356_02680 are separated by 24 nucleotidesAO356_02680 and AO356_02685 are separated by 2 nucleotidesAO356_02685 and AO356_02690 are separated by 271 nucleotides AO356_02675: AO356_02675 - cell invasion protein, at 587,203 to 588,300 _02675 AO356_02680: AO356_02680 - cell invasion protein SipB, at 588,325 to 590,094 _02680 AO356_02685: AO356_02685 - chaperone protein SicA, at 590,097 to 590,579 _02685 AO356_02690: AO356_02690 - type III secretion system protein SpaS, at 590,851 to 591,885 _02690 Position (kb) 588 589 590 591Strain fitness (log2 ratio) -2 -1 0 1at 587.636 kb on + strand, within AO356_02675at 587.636 kb on + strand, within AO356_02675at 587.636 kb on + strand, within AO356_02675at 587.637 kb on - strand, within AO356_02675at 587.716 kb on - strand, within AO356_02675at 588.288 kb on - strandat 588.291 kb on + strandat 588.291 kb on + strandat 588.291 kb on + strandat 588.292 kb on - strandat 588.292 kb on - strandat 588.292 kb on - strandat 588.303 kb on + strandat 588.303 kb on + strandat 588.303 kb on + strandat 588.304 kb on - strandat 588.304 kb on - strandat 588.307 kb on + strandat 588.307 kb on + strandat 588.308 kb on - strandat 588.426 kb on - strandat 588.426 kb on - strandat 588.481 kb on + strandat 588.907 kb on + strand, within AO356_02680at 588.907 kb on + strand, within AO356_02680at 588.907 kb on + strand, within AO356_02680at 588.908 kb on - strand, within AO356_02680at 588.922 kb on - strand, within AO356_02680at 588.922 kb on - strand, within AO356_02680at 588.923 kb on + strand, within AO356_02680at 588.923 kb on + strand, within AO356_02680at 588.923 kb on + strand, within AO356_02680at 588.923 kb on + strand, within AO356_02680at 588.924 kb on - strand, within AO356_02680at 588.924 kb on - strand, within AO356_02680at 588.924 kb on - strand, within AO356_02680at 589.190 kb on + strand, within AO356_02680at 589.541 kb on + strand, within AO356_02680at 589.698 kb on - strand, within AO356_02680at 589.698 kb on - strand, within AO356_02680at 589.885 kb on + strand, within AO356_02680at 589.885 kb on + strand, within AO356_02680at 589.885 kb on + strand, within AO356_02680at 589.885 kb on + strand, within AO356_02680at 589.885 kb on + strand, within AO356_02680at 589.886 kb on - strand, within AO356_02680at 589.886 kb on - strand, within AO356_02680at 589.886 kb on - strand, within AO356_02680at 589.886 kb on - strand, within AO356_02680at 589.934 kb on + strandat 589.934 kb on + strandat 589.935 kb on - strandat 589.935 kb on - strandat 590.083 kb on + strandat 590.084 kb on - strandat 590.084 kb on - strandat 590.143 kb on + strandat 590.143 kb on + strandat 590.143 kb on + strandat 590.144 kb on - strandat 590.194 kb on + strand, within AO356_02685at 590.195 kb on - strand, within AO356_02685at 590.195 kb on - strand, within AO356_02685at 590.254 kb on + strand, within AO356_02685at 590.255 kb on - strand, within AO356_02685at 590.303 kb on - strand, within AO356_02685at 590.377 kb on + strand, within AO356_02685at 590.377 kb on + strand, within AO356_02685at 590.378 kb on - strand, within AO356_02685at 590.378 kb on - strand, within AO356_02685at 590.386 kb on + strand, within AO356_02685at 590.386 kb on + strand, within AO356_02685at 590.386 kb on + strand, within AO356_02685at 590.440 kb on + strand, within AO356_02685at 590.440 kb on + strand, within AO356_02685at 590.440 kb on + strand, within AO356_02685at 590.440 kb on + strand, within AO356_02685at 590.440 kb on + strand, within AO356_02685at 590.461 kb on + strand, within AO356_02685at 590.461 kb on + strand, within AO356_02685at 590.461 kb on + strand, within AO356_02685at 590.462 kb on - strand, within AO356_02685at 590.710 kb on - strandat 591.003 kb on - strand, within AO356_02690

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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587,636 + AO356_02675 0.39 +0.3
587,636 + AO356_02675 0.39 +0.1
587,636 + AO356_02675 0.39 -0.4
587,637 - AO356_02675 0.40 +0.4
587,716 - AO356_02675 0.47 +0.4
588,288 - -0.3
588,291 + -0.2
588,291 + -0.7
588,291 + +0.7
588,292 - +0.7
588,292 - -0.2
588,292 - -0.0
588,303 + +0.3
588,303 + +1.0
588,303 + -0.2
588,304 - -0.6
588,304 - -0.0
588,307 + +0.1
588,307 + +1.0
588,308 - -0.4
588,426 - -0.3
588,426 - -0.0
588,481 + -1.0
588,907 + AO356_02680 0.33 -0.5
588,907 + AO356_02680 0.33 +0.3
588,907 + AO356_02680 0.33 -2.4
588,908 - AO356_02680 0.33 -1.4
588,922 - AO356_02680 0.34 -0.5
588,922 - AO356_02680 0.34 -1.4
588,923 + AO356_02680 0.34 -0.2
588,923 + AO356_02680 0.34 +0.5
588,923 + AO356_02680 0.34 +1.0
588,923 + AO356_02680 0.34 -0.0
588,924 - AO356_02680 0.34 +0.6
588,924 - AO356_02680 0.34 +0.0
588,924 - AO356_02680 0.34 -0.5
589,190 + AO356_02680 0.49 -1.0
589,541 + AO356_02680 0.69 -0.2
589,698 - AO356_02680 0.78 -0.5
589,698 - AO356_02680 0.78 -0.7
589,885 + AO356_02680 0.88 +0.3
589,885 + AO356_02680 0.88 -2.3
589,885 + AO356_02680 0.88 +1.1
589,885 + AO356_02680 0.88 -0.0
589,885 + AO356_02680 0.88 +0.1
589,886 - AO356_02680 0.88 -0.0
589,886 - AO356_02680 0.88 +0.8
589,886 - AO356_02680 0.88 -0.5
589,886 - AO356_02680 0.88 +0.1
589,934 + +0.5
589,934 + +0.1
589,935 - -0.0
589,935 - +0.4
590,083 + +0.5
590,084 - +0.2
590,084 - +0.5
590,143 + +0.2
590,143 + +0.8
590,143 + -0.4
590,144 - +0.4
590,194 + AO356_02685 0.20 +0.5
590,195 - AO356_02685 0.20 +0.3
590,195 - AO356_02685 0.20 -0.5
590,254 + AO356_02685 0.33 +0.1
590,255 - AO356_02685 0.33 -0.9
590,303 - AO356_02685 0.43 -0.2
590,377 + AO356_02685 0.58 +0.2
590,377 + AO356_02685 0.58 -1.4
590,378 - AO356_02685 0.58 +0.6
590,378 - AO356_02685 0.58 -0.5
590,386 + AO356_02685 0.60 +0.4
590,386 + AO356_02685 0.60 -0.5
590,386 + AO356_02685 0.60 +0.2
590,440 + AO356_02685 0.71 +0.3
590,440 + AO356_02685 0.71 -0.5
590,440 + AO356_02685 0.71 +0.6
590,440 + AO356_02685 0.71 +0.2
590,440 + AO356_02685 0.71 +0.6
590,461 + AO356_02685 0.75 +0.6
590,461 + AO356_02685 0.75 +1.4
590,461 + AO356_02685 0.75 +1.0
590,462 - AO356_02685 0.76 -0.4
590,710 - +0.8
591,003 - AO356_02690 0.15 -1.1

Or see this region's nucleotide sequence