Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001277

Experiment: D-Raffinose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Raffinose (C)
1,426,770	+		ABIE53_001276	0.62	-3.9
1,426,770	+		ABIE53_001276	0.62	-1.4
1,426,770	+		ABIE53_001276	0.62	-0.4
1,426,770	+		ABIE53_001276	0.62	-1.5
1,426,771	-		ABIE53_001276	0.62	-1.1
1,426,771	-		ABIE53_001276	0.62	-0.7
1,426,771	-		ABIE53_001276	0.62	-2.1
1,426,771	-		ABIE53_001276	0.62	-1.8
1,426,771	-		ABIE53_001276	0.62	+0.6
1,426,771	-		ABIE53_001276	0.62	-0.9
1,426,771	-		ABIE53_001276	0.62	-2.3
1,426,771	-		ABIE53_001276	0.62	-1.5
1,426,771	-		ABIE53_001276	0.62	-0.9
1,426,771	-		ABIE53_001276	0.62	-1.5
1,426,938	+		ABIE53_001276	0.74	-0.7
1,426,939	-		ABIE53_001276	0.75	-1.2
1,427,078	+		ABIE53_001276	0.85	-4.4
1,427,078	+		ABIE53_001276	0.85	-1.5
1,427,079	-		ABIE53_001276	0.85	-2.0
1,427,079	-		ABIE53_001276	0.85	+1.6
1,427,079	-		ABIE53_001276	0.85	-0.9
1,427,079	-		ABIE53_001276	0.85	-0.4
1,427,079	-		ABIE53_001276	0.85	-1.1
1,427,079	-		ABIE53_001276	0.85	-1.5
1,427,079	-		ABIE53_001276	0.85	-1.1
1,427,079	-		ABIE53_001276	0.85	-1.7
1,427,079	-		ABIE53_001276	0.85	-2.5
1,427,079	-		ABIE53_001276	0.85	+0.9
1,427,079	-		ABIE53_001276	0.85	-1.4
1,427,115	+		ABIE53_001276	0.88	-0.9
1,427,115	+		ABIE53_001276	0.88	-2.1
1,427,257	-				-0.4
1,427,346	-				-2.1
1,427,379	-				-2.1
1,427,388	-				-0.4
1,427,388	-				-1.9
1,427,406	+				-0.8
1,427,406	+				-1.3
1,427,407	-				-2.7
1,427,407	-				-0.7
1,427,412	+				-0.4
1,427,412	+				+0.1
1,427,413	-				-2.4
1,427,413	-				-3.4
1,427,413	-				+0.1
1,427,413	-				-2.2
1,427,413	-				+0.6
1,427,649	+				-2.1
1,427,763	+				-0.4
1,427,763	+				-1.2
1,427,763	+				-3.2
1,427,763	+				-3.0
1,427,763	+				-2.7
1,427,763	+				-2.1
1,427,763	+				-4.0
1,427,763	+				-2.4
1,427,763	+				-0.4
1,427,763	+				-2.9
1,427,763	+				+1.6
1,427,763	+				+0.6
1,427,763	+				-2.1
1,427,764	-				-0.4
1,427,764	-				+0.1
1,427,764	-				-2.9
1,427,764	-				-0.9
1,427,764	-				-3.3
1,427,764	-				-2.2
1,427,764	-				-2.3
1,427,764	-				-1.2
1,427,931	+		ABIE53_001277	0.13	-1.4
1,427,931	+		ABIE53_001277	0.13	-2.6
1,428,159	+		ABIE53_001277	0.31	-1.2
1,428,159	+		ABIE53_001277	0.31	-1.5
1,428,159	+		ABIE53_001277	0.31	-2.5
1,428,160	-		ABIE53_001277	0.31	-3.4
1,428,160	-		ABIE53_001277	0.31	-2.3
1,428,201	+		ABIE53_001277	0.35	-4.0
1,428,201	+		ABIE53_001277	0.35	+0.1
1,428,201	+		ABIE53_001277	0.35	-4.6
1,428,201	+		ABIE53_001277	0.35	-1.9
1,428,201	+		ABIE53_001277	0.35	-1.5
1,428,201	+		ABIE53_001277	0.35	-2.9
1,428,201	+		ABIE53_001277	0.35	-3.6
1,428,201	+		ABIE53_001277	0.35	-0.4
1,428,201	+		ABIE53_001277	0.35	-2.5
1,428,201	+		ABIE53_001277	0.35	-1.2
1,428,201	+		ABIE53_001277	0.35	-0.4
1,428,201	+		ABIE53_001277	0.35	-4.7
1,428,201	+		ABIE53_001277	0.35	+1.6
1,428,202	-		ABIE53_001277	0.35	-2.9
1,428,202	-		ABIE53_001277	0.35	-4.6
1,428,202	-		ABIE53_001277	0.35	-3.2
1,428,202	-		ABIE53_001277	0.35	-2.3
1,428,202	-		ABIE53_001277	0.35	-2.8
1,428,202	-		ABIE53_001277	0.35	-0.7
1,428,202	-		ABIE53_001277	0.35	-2.1
1,428,202	-		ABIE53_001277	0.35	-2.1
1,428,202	-		ABIE53_001277	0.35	-0.7
1,428,202	-		ABIE53_001277	0.35	-2.8
1,428,202	-		ABIE53_001277	0.35	-3.5
1,428,381	+		ABIE53_001277	0.49	-0.7
1,428,381	+		ABIE53_001277	0.49	-2.5
1,428,382	-		ABIE53_001277	0.49	-2.9
1,428,382	-		ABIE53_001277	0.49	-1.9
1,428,472	-		ABIE53_001277	0.56	-1.4
1,428,472	-		ABIE53_001277	0.56	-3.3
1,428,609	+		ABIE53_001277	0.67	+0.6
1,428,609	+		ABIE53_001277	0.67	-4.2
1,428,609	+		ABIE53_001277	0.67	-2.6
1,428,610	-		ABIE53_001277	0.67	-2.9
1,428,610	-		ABIE53_001277	0.67	-2.4
1,428,610	-		ABIE53_001277	0.67	-4.2
1,428,610	-		ABIE53_001277	0.67	-3.0
1,428,645	+		ABIE53_001277	0.70	-2.3
1,428,646	-		ABIE53_001277	0.70	-2.2
1,428,837	+		ABIE53_001277	0.86	-2.2
1,428,874	-		ABIE53_001277	0.89	-4.9
1,428,874	-		ABIE53_001277	0.89	-0.4
1,428,874	-		ABIE53_001277	0.89	-4.4
1,429,014	+				-1.2
1,429,014	+				-0.6
1,429,014	+				-2.0
1,429,014	+				-1.5
1,429,014	+				-2.1
1,429,014	+				-0.4
1,429,014	+				-2.3
1,429,015	-				-0.7
1,429,015	-				-1.9
1,429,015	-				-1.2
1,429,015	-				-3.4
1,429,015	-				-1.5
1,429,015	-				-1.5
1,429,015	-				-0.7
1,429,015	-				-4.2
1,429,015	-				-0.9
1,429,024	-				-0.4
1,429,048	+				-1.2
1,429,048	+				-1.2
1,429,048	+				-1.4
1,429,048	+				+0.6
1,429,048	+				+0.3
1,429,049	-				-0.5
1,429,049	-				-2.3
1,429,049	-				-1.5
1,429,052	-				-1.9
1,429,052	-				-2.2
1,429,052	-				-2.8
1,429,052	-				-0.7
1,429,052	-				-1.1
1,429,169	-				-1.5
1,429,169	-				-1.4
1,429,181	+				-2.1
1,429,181	+				-1.8
1,429,181	+				-0.7
1,429,182	-				-0.4
1,429,182	-				-2.9
1,429,305	+		ABIE53_001278	0.14	-0.9
1,429,314	-		ABIE53_001278	0.15	-2.9
1,429,330	-		ABIE53_001278	0.17	+1.6
1,429,330	-		ABIE53_001278	0.17	-0.7
1,429,366	-		ABIE53_001278	0.21	-1.7
1,429,664	+		ABIE53_001278	0.53	-2.8
1,429,664	+		ABIE53_001278	0.53	-5.1
1,429,665	-		ABIE53_001278	0.53	-1.5
1,429,665	-		ABIE53_001278	0.53	-3.9
1,429,703	-		ABIE53_001278	0.57	-3.4
1,429,827	+		ABIE53_001278	0.70	-4.0
1,429,827	+		ABIE53_001278	0.70	-1.8
1,429,827	+		ABIE53_001278	0.70	-1.7
1,429,827	+		ABIE53_001278	0.70	+0.6
1,429,827	+		ABIE53_001278	0.70	-2.5
1,429,828	-		ABIE53_001278	0.70	-2.4
1,429,828	-		ABIE53_001278	0.70	-1.7
1,429,828	-		ABIE53_001278	0.70	+0.6
1,429,828	-		ABIE53_001278	0.70	+0.2
1,429,828	-		ABIE53_001278	0.70	-2.3
1,429,828	-		ABIE53_001278	0.70	-3.4
1,429,967	+		ABIE53_001278	0.85	-0.9
1,429,977	+		ABIE53_001278	0.86	-1.2
1,429,977	+		ABIE53_001278	0.86	+1.6
1,429,977	+		ABIE53_001278	0.86	-3.2
1,429,978	-		ABIE53_001278	0.86	-2.5