Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01710 and SMc01709 overlap by 209 nucleotides SMc01709 and SMc01708 are separated by 662 nucleotides
SMc01710: SMc01710 - hypothetical protein, at 496,646 to 501,478
SMc01710
SMc01709: SMc01709 - signal peptide protein, at 501,270 to 501,773
SMc01709
SMc01708: SMc01708 - hypothetical protein, at 502,436 to 506,311
SMc01708
Position (kb)
501
502 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 500.405 kb on - strand, within SMc01710 at 500.405 kb on - strand, within SMc01710 at 500.470 kb on - strand, within SMc01710 at 500.590 kb on + strand, within SMc01710 at 500.591 kb on - strand, within SMc01710 at 500.591 kb on - strand, within SMc01710 at 500.632 kb on + strand, within SMc01710 at 500.672 kb on - strand, within SMc01710 at 500.672 kb on - strand, within SMc01710 at 500.702 kb on + strand, within SMc01710 at 500.702 kb on + strand, within SMc01710 at 500.703 kb on - strand, within SMc01710 at 500.750 kb on + strand, within SMc01710 at 500.750 kb on + strand, within SMc01710 at 500.750 kb on + strand, within SMc01710 at 500.750 kb on + strand, within SMc01710 at 500.750 kb on + strand, within SMc01710 at 500.751 kb on - strand, within SMc01710 at 500.751 kb on - strand, within SMc01710 at 500.840 kb on + strand, within SMc01710 at 500.840 kb on + strand, within SMc01710 at 501.112 kb on + strand at 501.113 kb on - strand at 501.285 kb on - strand at 501.285 kb on - strand at 501.536 kb on + strand, within SMc01709 at 501.537 kb on - strand, within SMc01709 at 501.627 kb on + strand, within SMc01709 at 501.628 kb on - strand, within SMc01709 at 501.743 kb on + strand at 501.743 kb on + strand at 501.771 kb on + strand at 501.772 kb on - strand at 501.838 kb on + strand at 501.838 kb on + strand at 501.839 kb on - strand at 501.839 kb on - strand at 501.839 kb on - strand at 501.848 kb on + strand at 501.849 kb on - strand at 501.849 kb on - strand at 502.214 kb on - strand at 502.259 kb on + strand at 502.259 kb on + strand at 502.259 kb on + strand at 502.259 kb on + strand at 502.259 kb on + strand at 502.259 kb on + strand at 502.260 kb on - strand at 502.260 kb on - strand at 502.324 kb on + strand at 502.325 kb on - strand at 502.353 kb on + strand at 502.353 kb on + strand at 502.401 kb on + strand at 502.495 kb on + strand at 502.496 kb on - strand at 502.496 kb on - strand at 502.496 kb on - strand at 502.542 kb on - strand at 502.658 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 500,405 - SMc01710 0.78 +0.7 500,405 - SMc01710 0.78 -2.0 500,470 - SMc01710 0.79 -0.4 500,590 + SMc01710 0.82 +1.3 500,591 - SMc01710 0.82 +0.0 500,591 - SMc01710 0.82 -0.1 500,632 + SMc01710 0.82 -0.4 500,672 - SMc01710 0.83 +0.1 500,672 - SMc01710 0.83 +0.2 500,702 + SMc01710 0.84 -0.4 500,702 + SMc01710 0.84 -1.1 500,703 - SMc01710 0.84 +0.2 500,750 + SMc01710 0.85 +0.2 500,750 + SMc01710 0.85 +0.1 500,750 + SMc01710 0.85 -0.1 500,750 + SMc01710 0.85 -0.0 500,750 + SMc01710 0.85 +0.7 500,751 - SMc01710 0.85 -0.2 500,751 - SMc01710 0.85 +0.3 500,840 + SMc01710 0.87 -0.2 500,840 + SMc01710 0.87 -0.8 501,112 + -2.2 501,113 - +0.1 501,285 - -0.1 501,285 - -0.5 501,536 + SMc01709 0.53 -2.0 501,537 - SMc01709 0.53 -0.9 501,627 + SMc01709 0.71 -1.3 501,628 - SMc01709 0.71 +0.0 501,743 + -1.0 501,743 + -0.5 501,771 + -1.3 501,772 - +0.4 501,838 + -0.4 501,838 + -0.3 501,839 - +0.1 501,839 - -0.5 501,839 - +1.8 501,848 + -0.6 501,849 - -0.5 501,849 - +0.2 502,214 - +0.7 502,259 + -0.2 502,259 + +0.2 502,259 + +1.4 502,259 + -0.7 502,259 + +0.6 502,259 + +1.2 502,260 - -0.1 502,260 - -1.0 502,324 + +0.7 502,325 - -0.1 502,353 + +0.4 502,353 + -0.5 502,401 + -0.1 502,495 + -1.3 502,496 - +0.3 502,496 - +0.6 502,496 - +0.2 502,542 - +0.1 502,658 - -0.2
Or see this region's nucleotide sequence