Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00992 and SMc00991 overlap by 4 nucleotides SMc00991 and SMc00990 are separated by 106 nucleotides
SMc00992: SMc00992 - hypothetical protein, at 940,092 to 942,464
SMc00992
SMc00991: SMc00991 - putrescine-binding periplasmic protein, at 942,461 to 943,501
SMc00991
SMc00990: SMc00990 - fosmidomycin resistance antibiotic resistance transmembrane protein, at 943,608 to 944,804
SMc00990
Position (kb) 942
943
944 Strain fitness (log2 ratio) -2
-1
0
1 at 941.694 kb on + strand, within SMc00992 at 941.836 kb on + strand, within SMc00992 at 941.837 kb on - strand, within SMc00992 at 941.837 kb on - strand, within SMc00992 at 941.965 kb on + strand, within SMc00992 at 941.966 kb on - strand, within SMc00992 at 941.966 kb on - strand, within SMc00992 at 942.001 kb on + strand, within SMc00992 at 942.001 kb on + strand, within SMc00992 at 942.002 kb on - strand, within SMc00992 at 942.002 kb on - strand, within SMc00992 at 942.002 kb on - strand, within SMc00992 at 942.002 kb on - strand, within SMc00992 at 942.002 kb on - strand, within SMc00992 at 942.100 kb on + strand, within SMc00992 at 942.101 kb on - strand, within SMc00992 at 942.143 kb on + strand, within SMc00992 at 942.238 kb on + strand at 942.409 kb on + strand at 942.410 kb on - strand at 942.508 kb on + strand at 942.757 kb on + strand, within SMc00991 at 942.757 kb on + strand, within SMc00991 at 942.757 kb on + strand, within SMc00991 at 942.849 kb on + strand, within SMc00991 at 942.850 kb on - strand, within SMc00991 at 942.850 kb on - strand, within SMc00991 at 942.851 kb on + strand, within SMc00991 at 942.852 kb on - strand, within SMc00991 at 942.852 kb on - strand, within SMc00991 at 942.852 kb on - strand, within SMc00991 at 942.852 kb on - strand, within SMc00991 at 942.852 kb on - strand, within SMc00991 at 942.852 kb on - strand, within SMc00991 at 942.853 kb on + strand, within SMc00991 at 942.853 kb on + strand, within SMc00991 at 942.854 kb on - strand, within SMc00991 at 942.854 kb on - strand, within SMc00991 at 942.894 kb on + strand, within SMc00991 at 942.895 kb on - strand, within SMc00991 at 942.901 kb on - strand, within SMc00991 at 942.901 kb on - strand, within SMc00991 at 943.188 kb on + strand, within SMc00991 at 943.188 kb on + strand, within SMc00991 at 943.188 kb on + strand, within SMc00991 at 943.189 kb on - strand, within SMc00991 at 943.189 kb on - strand, within SMc00991 at 943.402 kb on + strand at 943.403 kb on - strand at 943.404 kb on + strand at 943.405 kb on - strand at 943.405 kb on - strand at 943.405 kb on - strand at 943.418 kb on - strand at 943.483 kb on + strand at 943.561 kb on - strand at 943.635 kb on + strand at 943.664 kb on - strand at 943.677 kb on - strand at 943.677 kb on - strand at 943.678 kb on + strand at 943.678 kb on + strand at 944.017 kb on - strand, within SMc00990 at 944.040 kb on + strand, within SMc00990 at 944.040 kb on + strand, within SMc00990 at 944.041 kb on - strand, within SMc00990 at 944.041 kb on - strand, within SMc00990 at 944.080 kb on + strand, within SMc00990 at 944.080 kb on + strand, within SMc00990 at 944.080 kb on + strand, within SMc00990 at 944.081 kb on - strand, within SMc00990 at 944.101 kb on + strand, within SMc00990 at 944.102 kb on - strand, within SMc00990 at 944.102 kb on - strand, within SMc00990 at 944.224 kb on + strand, within SMc00990 at 944.224 kb on + strand, within SMc00990 at 944.224 kb on + strand, within SMc00990 at 944.225 kb on - strand, within SMc00990
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 941,694 + SMc00992 0.68 +0.2 941,836 + SMc00992 0.73 -0.3 941,837 - SMc00992 0.74 +1.2 941,837 - SMc00992 0.74 -0.2 941,965 + SMc00992 0.79 +0.1 941,966 - SMc00992 0.79 +0.3 941,966 - SMc00992 0.79 -1.4 942,001 + SMc00992 0.80 +0.6 942,001 + SMc00992 0.80 -0.2 942,002 - SMc00992 0.80 +0.7 942,002 - SMc00992 0.80 -1.0 942,002 - SMc00992 0.80 -0.0 942,002 - SMc00992 0.80 -1.2 942,002 - SMc00992 0.80 +0.2 942,100 + SMc00992 0.85 +0.2 942,101 - SMc00992 0.85 +0.9 942,143 + SMc00992 0.86 +0.2 942,238 + +0.2 942,409 + +0.1 942,410 - -0.3 942,508 + +0.6 942,757 + SMc00991 0.28 +0.8 942,757 + SMc00991 0.28 +0.0 942,757 + SMc00991 0.28 +0.7 942,849 + SMc00991 0.37 -0.2 942,850 - SMc00991 0.37 -1.7 942,850 - SMc00991 0.37 +0.3 942,851 + SMc00991 0.37 -0.2 942,852 - SMc00991 0.38 +0.4 942,852 - SMc00991 0.38 +0.4 942,852 - SMc00991 0.38 +0.4 942,852 - SMc00991 0.38 +0.7 942,852 - SMc00991 0.38 +0.8 942,852 - SMc00991 0.38 -0.1 942,853 + SMc00991 0.38 +0.5 942,853 + SMc00991 0.38 -0.7 942,854 - SMc00991 0.38 +0.2 942,854 - SMc00991 0.38 +0.5 942,894 + SMc00991 0.42 +0.1 942,895 - SMc00991 0.42 +0.1 942,901 - SMc00991 0.42 +0.3 942,901 - SMc00991 0.42 +0.5 943,188 + SMc00991 0.70 -0.2 943,188 + SMc00991 0.70 -0.5 943,188 + SMc00991 0.70 -0.1 943,189 - SMc00991 0.70 +0.3 943,189 - SMc00991 0.70 -0.1 943,402 + +0.3 943,403 - +1.2 943,404 + -1.2 943,405 - +0.5 943,405 - -2.7 943,405 - +0.3 943,418 - +0.4 943,483 + -0.2 943,561 - +0.5 943,635 + -0.2 943,664 - -1.2 943,677 - -0.1 943,677 - -0.4 943,678 + +1.0 943,678 + +0.5 944,017 - SMc00990 0.34 -0.2 944,040 + SMc00990 0.36 -0.1 944,040 + SMc00990 0.36 -0.6 944,041 - SMc00990 0.36 +0.0 944,041 - SMc00990 0.36 -0.1 944,080 + SMc00990 0.39 +0.3 944,080 + SMc00990 0.39 -0.2 944,080 + SMc00990 0.39 +0.4 944,081 - SMc00990 0.40 -0.1 944,101 + SMc00990 0.41 +0.4 944,102 - SMc00990 0.41 +0.2 944,102 - SMc00990 0.41 +0.1 944,224 + SMc00990 0.51 -0.6 944,224 + SMc00990 0.51 +1.2 944,224 + SMc00990 0.51 -0.2 944,225 - SMc00990 0.52 -0.3
Or see this region's nucleotide sequence