Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36915

Experiment: R2A with Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS36905 and RR42_RS36910 are separated by 79 nucleotidesRR42_RS36910 and RR42_RS36915 are separated by 47 nucleotidesRR42_RS36915 and RR42_RS36920 are separated by 225 nucleotidesRR42_RS36920 and RR42_RS36925 overlap by 4 nucleotides RR42_RS36905: RR42_RS36905 - ArsR family transcriptional regulator, at 3,736,010 to 3,736,699 _RS36905 RR42_RS36910: RR42_RS36910 - hypothetical protein, at 3,736,779 to 3,737,288 _RS36910 RR42_RS36915: RR42_RS36915 - LysR family transcriptional regulator, at 3,737,336 to 3,738,265 _RS36915 RR42_RS36920: RR42_RS36920 - TetR family transcriptional regulator, at 3,738,491 to 3,739,204 _RS36920 RR42_RS36925: RR42_RS36925 - carotenoid oxygenase, at 3,739,201 to 3,740,595 _RS36925 Position (kb) 3737 3738 3739Strain fitness (log2 ratio) -2 -1 0 1 2at 3736.361 kb on + strand, within RR42_RS36905at 3736.406 kb on - strand, within RR42_RS36905at 3736.406 kb on - strand, within RR42_RS36905at 3736.406 kb on - strand, within RR42_RS36905at 3736.406 kb on - strand, within RR42_RS36905at 3736.601 kb on - strand, within RR42_RS36905at 3736.980 kb on + strand, within RR42_RS36910at 3736.980 kb on + strand, within RR42_RS36910at 3736.980 kb on + strand, within RR42_RS36910at 3736.980 kb on + strand, within RR42_RS36910at 3736.980 kb on + strand, within RR42_RS36910at 3736.981 kb on - strand, within RR42_RS36910at 3736.981 kb on - strand, within RR42_RS36910at 3736.981 kb on - strand, within RR42_RS36910at 3736.981 kb on - strand, within RR42_RS36910at 3736.981 kb on - strand, within RR42_RS36910at 3736.981 kb on - strand, within RR42_RS36910at 3737.191 kb on - strand, within RR42_RS36910at 3737.284 kb on - strandat 3737.532 kb on + strand, within RR42_RS36915at 3737.533 kb on - strand, within RR42_RS36915at 3737.533 kb on - strand, within RR42_RS36915at 3737.926 kb on + strand, within RR42_RS36915at 3737.926 kb on + strand, within RR42_RS36915at 3737.926 kb on + strand, within RR42_RS36915at 3737.927 kb on - strand, within RR42_RS36915at 3737.927 kb on - strand, within RR42_RS36915at 3737.927 kb on - strand, within RR42_RS36915at 3737.961 kb on + strand, within RR42_RS36915at 3737.961 kb on + strand, within RR42_RS36915at 3737.961 kb on + strand, within RR42_RS36915at 3737.961 kb on + strand, within RR42_RS36915at 3737.962 kb on - strand, within RR42_RS36915at 3737.962 kb on - strand, within RR42_RS36915at 3737.962 kb on - strand, within RR42_RS36915at 3737.962 kb on - strand, within RR42_RS36915at 3737.962 kb on - strand, within RR42_RS36915at 3738.041 kb on - strand, within RR42_RS36915at 3738.063 kb on + strand, within RR42_RS36915at 3738.064 kb on + strand, within RR42_RS36915at 3738.064 kb on - strand, within RR42_RS36915at 3738.776 kb on + strand, within RR42_RS36920at 3738.776 kb on + strand, within RR42_RS36920at 3738.959 kb on + strand, within RR42_RS36920at 3738.959 kb on + strand, within RR42_RS36920at 3739.228 kb on + strandat 3739.229 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml
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3,736,361 + RR42_RS36905 0.51 +0.2
3,736,406 - RR42_RS36905 0.57 -1.3
3,736,406 - RR42_RS36905 0.57 -0.9
3,736,406 - RR42_RS36905 0.57 -1.4
3,736,406 - RR42_RS36905 0.57 +0.5
3,736,601 - RR42_RS36905 0.86 +0.1
3,736,980 + RR42_RS36910 0.39 -1.7
3,736,980 + RR42_RS36910 0.39 -0.2
3,736,980 + RR42_RS36910 0.39 +2.3
3,736,980 + RR42_RS36910 0.39 +1.0
3,736,980 + RR42_RS36910 0.39 +0.6
3,736,981 - RR42_RS36910 0.40 +0.5
3,736,981 - RR42_RS36910 0.40 +0.2
3,736,981 - RR42_RS36910 0.40 +0.5
3,736,981 - RR42_RS36910 0.40 -0.9
3,736,981 - RR42_RS36910 0.40 -0.5
3,736,981 - RR42_RS36910 0.40 -0.5
3,737,191 - RR42_RS36910 0.81 -1.1
3,737,284 - +1.5
3,737,532 + RR42_RS36915 0.21 -1.3
3,737,533 - RR42_RS36915 0.21 +0.1
3,737,533 - RR42_RS36915 0.21 -0.7
3,737,926 + RR42_RS36915 0.63 +0.0
3,737,926 + RR42_RS36915 0.63 -1.3
3,737,926 + RR42_RS36915 0.63 +0.1
3,737,927 - RR42_RS36915 0.64 -0.1
3,737,927 - RR42_RS36915 0.64 -1.3
3,737,927 - RR42_RS36915 0.64 +0.5
3,737,961 + RR42_RS36915 0.67 -0.7
3,737,961 + RR42_RS36915 0.67 -0.1
3,737,961 + RR42_RS36915 0.67 +0.5
3,737,961 + RR42_RS36915 0.67 +0.1
3,737,962 - RR42_RS36915 0.67 -1.3
3,737,962 - RR42_RS36915 0.67 -0.2
3,737,962 - RR42_RS36915 0.67 -1.8
3,737,962 - RR42_RS36915 0.67 +0.4
3,737,962 - RR42_RS36915 0.67 +0.5
3,738,041 - RR42_RS36915 0.76 -1.0
3,738,063 + RR42_RS36915 0.78 -0.8
3,738,064 + RR42_RS36915 0.78 +0.2
3,738,064 - RR42_RS36915 0.78 +0.5
3,738,776 + RR42_RS36920 0.40 -0.6
3,738,776 + RR42_RS36920 0.40 +0.2
3,738,959 + RR42_RS36920 0.66 -0.7
3,738,959 + RR42_RS36920 0.66 +1.3
3,739,228 + -1.7
3,739,229 - -0.6

Or see this region's nucleotide sequence