Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS36820 and RR42_RS36825 are separated by 156 nucleotides RR42_RS36825 and RR42_RS36830 are separated by 7 nucleotides RR42_RS36830 and RR42_RS36835 are separated by 57 nucleotides
RR42_RS36820: RR42_RS36820 - poly(3-hydroxybutyrate) depolymerase, at 3,713,263 to 3,714,372
_RS36820
RR42_RS36825: RR42_RS36825 - membrane protein, at 3,714,529 to 3,715,284
_RS36825
RR42_RS36830: RR42_RS36830 - antibiotic biosynthesis monooxygenase, at 3,715,292 to 3,715,666
_RS36830
RR42_RS36835: RR42_RS36835 - cytochrome P450, at 3,715,724 to 3,716,848
_RS36835
Position (kb)
3715
3716 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3714.333 kb on + strand at 3714.482 kb on + strand at 3714.483 kb on - strand at 3714.483 kb on - strand at 3714.483 kb on - strand at 3714.807 kb on + strand, within RR42_RS36825 at 3714.808 kb on - strand, within RR42_RS36825 at 3714.809 kb on + strand, within RR42_RS36825 at 3714.809 kb on + strand, within RR42_RS36825 at 3714.809 kb on + strand, within RR42_RS36825 at 3714.810 kb on - strand, within RR42_RS36825 at 3714.810 kb on - strand, within RR42_RS36825 at 3714.810 kb on - strand, within RR42_RS36825 at 3714.944 kb on + strand, within RR42_RS36825 at 3714.944 kb on + strand, within RR42_RS36825 at 3714.945 kb on - strand, within RR42_RS36825 at 3714.945 kb on - strand, within RR42_RS36825 at 3714.945 kb on - strand, within RR42_RS36825 at 3715.111 kb on + strand, within RR42_RS36825 at 3715.188 kb on + strand, within RR42_RS36825 at 3715.239 kb on + strand at 3715.377 kb on + strand, within RR42_RS36830 at 3715.561 kb on + strand, within RR42_RS36830 at 3715.562 kb on - strand, within RR42_RS36830 at 3715.562 kb on - strand, within RR42_RS36830 at 3715.614 kb on + strand, within RR42_RS36830 at 3715.614 kb on + strand, within RR42_RS36830 at 3715.614 kb on + strand, within RR42_RS36830 at 3715.614 kb on + strand, within RR42_RS36830 at 3715.614 kb on + strand, within RR42_RS36830 at 3715.614 kb on + strand, within RR42_RS36830 at 3715.614 kb on + strand, within RR42_RS36830 at 3715.614 kb on + strand, within RR42_RS36830 at 3715.615 kb on - strand, within RR42_RS36830 at 3715.615 kb on - strand, within RR42_RS36830 at 3715.615 kb on - strand, within RR42_RS36830 at 3715.615 kb on - strand, within RR42_RS36830 at 3715.615 kb on - strand, within RR42_RS36830 at 3716.092 kb on + strand, within RR42_RS36835 at 3716.349 kb on - strand, within RR42_RS36835
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 3,714,333 + -0.9 3,714,482 + +0.1 3,714,483 - -1.0 3,714,483 - -0.8 3,714,483 - +1.4 3,714,807 + RR42_RS36825 0.37 +0.5 3,714,808 - RR42_RS36825 0.37 +0.1 3,714,809 + RR42_RS36825 0.37 -1.3 3,714,809 + RR42_RS36825 0.37 -0.5 3,714,809 + RR42_RS36825 0.37 -1.2 3,714,810 - RR42_RS36825 0.37 -2.6 3,714,810 - RR42_RS36825 0.37 -0.5 3,714,810 - RR42_RS36825 0.37 -1.9 3,714,944 + RR42_RS36825 0.55 -0.7 3,714,944 + RR42_RS36825 0.55 -2.0 3,714,945 - RR42_RS36825 0.55 +0.8 3,714,945 - RR42_RS36825 0.55 -2.2 3,714,945 - RR42_RS36825 0.55 +2.1 3,715,111 + RR42_RS36825 0.77 -2.6 3,715,188 + RR42_RS36825 0.87 +1.3 3,715,239 + -0.7 3,715,377 + RR42_RS36830 0.23 +0.1 3,715,561 + RR42_RS36830 0.72 -1.6 3,715,562 - RR42_RS36830 0.72 -1.3 3,715,562 - RR42_RS36830 0.72 -1.3 3,715,614 + RR42_RS36830 0.86 +0.0 3,715,614 + RR42_RS36830 0.86 -0.6 3,715,614 + RR42_RS36830 0.86 -1.3 3,715,614 + RR42_RS36830 0.86 -0.2 3,715,614 + RR42_RS36830 0.86 -1.9 3,715,614 + RR42_RS36830 0.86 -1.5 3,715,614 + RR42_RS36830 0.86 -1.4 3,715,614 + RR42_RS36830 0.86 -0.7 3,715,615 - RR42_RS36830 0.86 -1.5 3,715,615 - RR42_RS36830 0.86 -0.0 3,715,615 - RR42_RS36830 0.86 +0.1 3,715,615 - RR42_RS36830 0.86 +0.5 3,715,615 - RR42_RS36830 0.86 -0.5 3,716,092 + RR42_RS36835 0.33 -1.1 3,716,349 - RR42_RS36835 0.56 -0.3
Or see this region's nucleotide sequence