Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS36435 and RR42_RS36440 are separated by 9 nucleotides RR42_RS36440 and RR42_RS36445 are separated by 156 nucleotides
RR42_RS36435: RR42_RS36435 - LuxR family transcriptional regulator, at 3,629,497 to 3,630,657
_RS36435
RR42_RS36440: RR42_RS36440 - LysR family transcriptional regulator, at 3,630,667 to 3,631,557
_RS36440
RR42_RS36445: RR42_RS36445 - acetyl-CoA acetyltransferase, at 3,631,714 to 3,632,922
_RS36445
Position (kb)
3630
3631
3632 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3629.710 kb on + strand, within RR42_RS36435 at 3629.710 kb on + strand, within RR42_RS36435 at 3629.710 kb on + strand, within RR42_RS36435 at 3629.710 kb on + strand, within RR42_RS36435 at 3629.710 kb on + strand, within RR42_RS36435 at 3629.711 kb on - strand, within RR42_RS36435 at 3629.711 kb on - strand, within RR42_RS36435 at 3629.711 kb on - strand, within RR42_RS36435 at 3630.051 kb on + strand, within RR42_RS36435 at 3630.087 kb on + strand, within RR42_RS36435 at 3630.531 kb on + strand, within RR42_RS36435 at 3630.532 kb on - strand, within RR42_RS36435 at 3630.723 kb on + strand at 3630.807 kb on + strand, within RR42_RS36440 at 3630.807 kb on + strand, within RR42_RS36440 at 3630.807 kb on + strand, within RR42_RS36440 at 3630.807 kb on + strand, within RR42_RS36440 at 3630.809 kb on + strand, within RR42_RS36440 at 3630.810 kb on - strand, within RR42_RS36440 at 3630.810 kb on - strand, within RR42_RS36440 at 3630.810 kb on - strand, within RR42_RS36440 at 3630.810 kb on - strand, within RR42_RS36440 at 3631.091 kb on + strand, within RR42_RS36440 at 3631.092 kb on - strand, within RR42_RS36440 at 3631.250 kb on + strand, within RR42_RS36440 at 3631.251 kb on - strand, within RR42_RS36440 at 3631.251 kb on - strand, within RR42_RS36440 at 3631.407 kb on + strand, within RR42_RS36440 at 3631.407 kb on + strand, within RR42_RS36440 at 3631.408 kb on - strand, within RR42_RS36440 at 3631.635 kb on - strand at 3631.635 kb on - strand at 3631.772 kb on - strand at 3631.772 kb on - strand at 3632.123 kb on - strand, within RR42_RS36445 at 3632.191 kb on + strand, within RR42_RS36445 at 3632.192 kb on - strand, within RR42_RS36445 at 3632.192 kb on - strand, within RR42_RS36445 at 3632.350 kb on + strand, within RR42_RS36445 at 3632.350 kb on + strand, within RR42_RS36445 at 3632.422 kb on + strand, within RR42_RS36445
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 3,629,710 + RR42_RS36435 0.18 -1.5 3,629,710 + RR42_RS36435 0.18 -0.9 3,629,710 + RR42_RS36435 0.18 -0.1 3,629,710 + RR42_RS36435 0.18 -0.1 3,629,710 + RR42_RS36435 0.18 +1.2 3,629,711 - RR42_RS36435 0.18 -2.3 3,629,711 - RR42_RS36435 0.18 -0.2 3,629,711 - RR42_RS36435 0.18 -0.2 3,630,051 + RR42_RS36435 0.48 +0.9 3,630,087 + RR42_RS36435 0.51 -0.2 3,630,531 + RR42_RS36435 0.89 -0.1 3,630,532 - RR42_RS36435 0.89 +1.1 3,630,723 + -0.2 3,630,807 + RR42_RS36440 0.16 -0.0 3,630,807 + RR42_RS36440 0.16 +0.1 3,630,807 + RR42_RS36440 0.16 +0.8 3,630,807 + RR42_RS36440 0.16 +0.9 3,630,809 + RR42_RS36440 0.16 -0.6 3,630,810 - RR42_RS36440 0.16 -0.9 3,630,810 - RR42_RS36440 0.16 +1.0 3,630,810 - RR42_RS36440 0.16 -0.4 3,630,810 - RR42_RS36440 0.16 +1.3 3,631,091 + RR42_RS36440 0.48 -0.3 3,631,092 - RR42_RS36440 0.48 -1.3 3,631,250 + RR42_RS36440 0.65 -0.1 3,631,251 - RR42_RS36440 0.66 -1.7 3,631,251 - RR42_RS36440 0.66 -0.2 3,631,407 + RR42_RS36440 0.83 -0.4 3,631,407 + RR42_RS36440 0.83 +0.6 3,631,408 - RR42_RS36440 0.83 -0.1 3,631,635 - -0.7 3,631,635 - -1.3 3,631,772 - -0.0 3,631,772 - +1.1 3,632,123 - RR42_RS36445 0.34 +0.5 3,632,191 + RR42_RS36445 0.39 +4.1 3,632,192 - RR42_RS36445 0.40 -1.3 3,632,192 - RR42_RS36445 0.40 +0.3 3,632,350 + RR42_RS36445 0.53 -0.5 3,632,350 + RR42_RS36445 0.53 -0.3 3,632,422 + RR42_RS36445 0.59 -1.1
Or see this region's nucleotide sequence