Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS35010 and RR42_RS35015 are separated by 313 nucleotides RR42_RS35015 and RR42_RS35020 are separated by 288 nucleotides RR42_RS35020 and RR42_RS35025 are separated by 135 nucleotides
RR42_RS35010: RR42_RS35010 - GntR family transcriptional regulator, at 3,305,941 to 3,306,615
_RS35010
RR42_RS35015: RR42_RS35015 - hypothetical protein, at 3,306,929 to 3,307,111
_RS35015
RR42_RS35020: RR42_RS35020 - rubredoxin, at 3,307,400 to 3,307,585
_RS35020
RR42_RS35025: RR42_RS35025 - 2OG-Fe(II) oxygenase, at 3,307,721 to 3,311,713
_RS35025
Position (kb)
3307
3308 Strain fitness (log2 ratio)
-1
0
1
2 at 3306.582 kb on - strand at 3306.655 kb on - strand at 3306.695 kb on + strand at 3306.696 kb on - strand at 3306.708 kb on + strand at 3306.709 kb on - strand at 3306.709 kb on - strand at 3306.709 kb on - strand at 3306.709 kb on - strand at 3306.892 kb on + strand at 3306.892 kb on + strand at 3306.893 kb on - strand at 3307.105 kb on + strand at 3307.105 kb on + strand at 3307.105 kb on + strand at 3307.106 kb on - strand at 3307.106 kb on - strand at 3307.106 kb on - strand at 3307.106 kb on - strand at 3307.106 kb on - strand at 3307.155 kb on + strand at 3307.240 kb on + strand at 3307.331 kb on + strand at 3307.331 kb on + strand at 3307.331 kb on + strand at 3307.332 kb on - strand at 3307.332 kb on - strand at 3307.332 kb on - strand at 3307.332 kb on - strand at 3307.359 kb on + strand at 3307.528 kb on - strand, within RR42_RS35020 at 3307.564 kb on - strand, within RR42_RS35020 at 3307.598 kb on + strand at 3307.619 kb on + strand at 3307.619 kb on + strand at 3307.619 kb on + strand at 3307.620 kb on - strand at 3307.620 kb on - strand at 3308.013 kb on + strand at 3308.014 kb on - strand at 3308.304 kb on + strand, within RR42_RS35025 at 3308.305 kb on - strand, within RR42_RS35025 at 3308.305 kb on - strand, within RR42_RS35025 at 3308.470 kb on + strand, within RR42_RS35025 at 3308.470 kb on + strand, within RR42_RS35025 at 3308.471 kb on - strand, within RR42_RS35025 at 3308.471 kb on - strand, within RR42_RS35025 at 3308.471 kb on - strand, within RR42_RS35025 at 3308.563 kb on - strand, within RR42_RS35025
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 3,306,582 - -0.1 3,306,655 - -0.8 3,306,695 + +0.6 3,306,696 - +0.6 3,306,708 + -0.7 3,306,709 - +0.7 3,306,709 - +1.0 3,306,709 - -0.3 3,306,709 - +0.8 3,306,892 + +0.7 3,306,892 + +0.2 3,306,893 - -0.0 3,307,105 + +2.0 3,307,105 + +0.1 3,307,105 + -0.5 3,307,106 - -0.9 3,307,106 - -0.3 3,307,106 - +0.5 3,307,106 - -1.6 3,307,106 - -0.8 3,307,155 + -0.4 3,307,240 + +0.2 3,307,331 + +0.2 3,307,331 + -0.4 3,307,331 + +2.0 3,307,332 - -0.6 3,307,332 - +0.5 3,307,332 - -0.4 3,307,332 - +0.3 3,307,359 + -0.3 3,307,528 - RR42_RS35020 0.69 -0.0 3,307,564 - RR42_RS35020 0.88 -1.0 3,307,598 + -1.2 3,307,619 + +0.6 3,307,619 + -0.1 3,307,619 + +1.1 3,307,620 - -0.1 3,307,620 - -0.3 3,308,013 + +0.2 3,308,014 - -0.1 3,308,304 + RR42_RS35025 0.15 -0.1 3,308,305 - RR42_RS35025 0.15 -0.2 3,308,305 - RR42_RS35025 0.15 +0.6 3,308,470 + RR42_RS35025 0.19 +0.9 3,308,470 + RR42_RS35025 0.19 -1.3 3,308,471 - RR42_RS35025 0.19 +0.5 3,308,471 - RR42_RS35025 0.19 -0.4 3,308,471 - RR42_RS35025 0.19 +0.3 3,308,563 - RR42_RS35025 0.21 +0.3
Or see this region's nucleotide sequence