Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS34310

Experiment: R2A with Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS34300 and RR42_RS34305 are separated by 44 nucleotidesRR42_RS34305 and RR42_RS34310 overlap by 4 nucleotidesRR42_RS34310 and RR42_RS34315 are separated by 6 nucleotidesRR42_RS34315 and RR42_RS34320 are separated by 184 nucleotides RR42_RS34300: RR42_RS34300 - FAD-dependent oxidoreductase, at 3,123,791 to 3,125,065 _RS34300 RR42_RS34305: RR42_RS34305 - glutamine ABC transporter ATP-binding protein, at 3,125,110 to 3,125,868 _RS34305 RR42_RS34310: RR42_RS34310 - amino acid ABC transporter permease, at 3,125,865 to 3,126,533 _RS34310 RR42_RS34315: RR42_RS34315 - ABC transporter substrate-binding protein, at 3,126,540 to 3,127,304 _RS34315 RR42_RS34320: RR42_RS34320 - IclR family transcriptional regulator, at 3,127,489 to 3,128,283 _RS34320 Position (kb) 3125 3126 3127Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3125.472 kb on - strand, within RR42_RS34305at 3125.559 kb on - strand, within RR42_RS34305at 3125.559 kb on - strand, within RR42_RS34305at 3125.559 kb on - strand, within RR42_RS34305at 3125.711 kb on + strand, within RR42_RS34305at 3125.712 kb on - strand, within RR42_RS34305at 3125.840 kb on + strandat 3125.944 kb on + strand, within RR42_RS34310at 3125.945 kb on - strand, within RR42_RS34310at 3125.965 kb on + strand, within RR42_RS34310at 3125.965 kb on + strand, within RR42_RS34310at 3125.966 kb on - strand, within RR42_RS34310at 3125.966 kb on - strand, within RR42_RS34310at 3126.086 kb on - strand, within RR42_RS34310at 3126.227 kb on - strand, within RR42_RS34310at 3126.236 kb on - strand, within RR42_RS34310at 3126.307 kb on + strand, within RR42_RS34310at 3126.307 kb on + strand, within RR42_RS34310at 3126.307 kb on + strand, within RR42_RS34310at 3126.307 kb on + strand, within RR42_RS34310at 3126.308 kb on - strand, within RR42_RS34310at 3126.308 kb on - strand, within RR42_RS34310at 3126.311 kb on + strand, within RR42_RS34310at 3126.311 kb on + strand, within RR42_RS34310at 3126.312 kb on - strand, within RR42_RS34310at 3126.312 kb on - strandat 3126.312 kb on - strand, within RR42_RS34310at 3126.312 kb on - strand, within RR42_RS34310at 3126.313 kb on + strand, within RR42_RS34310at 3126.313 kb on + strand, within RR42_RS34310at 3126.313 kb on + strand, within RR42_RS34310at 3126.313 kb on + strand, within RR42_RS34310at 3126.313 kb on + strand, within RR42_RS34310at 3126.313 kb on + strand, within RR42_RS34310at 3126.314 kb on - strand, within RR42_RS34310at 3126.314 kb on - strand, within RR42_RS34310at 3126.314 kb on - strand, within RR42_RS34310at 3126.314 kb on - strand, within RR42_RS34310at 3126.314 kb on - strand, within RR42_RS34310at 3126.314 kb on - strand, within RR42_RS34310at 3126.314 kb on - strand, within RR42_RS34310at 3126.383 kb on + strand, within RR42_RS34310at 3126.383 kb on + strand, within RR42_RS34310at 3126.679 kb on + strand, within RR42_RS34315at 3126.679 kb on + strand, within RR42_RS34315at 3126.679 kb on + strand, within RR42_RS34315at 3126.680 kb on - strand, within RR42_RS34315at 3126.680 kb on - strand, within RR42_RS34315at 3126.727 kb on + strand, within RR42_RS34315at 3126.809 kb on - strand, within RR42_RS34315at 3126.914 kb on - strand, within RR42_RS34315at 3126.955 kb on + strand, within RR42_RS34315at 3126.961 kb on + strand, within RR42_RS34315at 3126.961 kb on + strand, within RR42_RS34315at 3126.962 kb on - strand, within RR42_RS34315at 3127.128 kb on - strand, within RR42_RS34315at 3127.128 kb on - strand, within RR42_RS34315at 3127.128 kb on - strand, within RR42_RS34315at 3127.208 kb on + strand, within RR42_RS34315at 3127.209 kb on - strand, within RR42_RS34315at 3127.209 kb on - strand, within RR42_RS34315at 3127.209 kb on - strand, within RR42_RS34315at 3127.210 kb on + strand, within RR42_RS34315at 3127.210 kb on + strand, within RR42_RS34315

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml
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3,125,472 - RR42_RS34305 0.48 -0.2
3,125,559 - RR42_RS34305 0.59 +1.0
3,125,559 - RR42_RS34305 0.59 -0.1
3,125,559 - RR42_RS34305 0.59 +1.1
3,125,711 + RR42_RS34305 0.79 +1.1
3,125,712 - RR42_RS34305 0.79 +0.3
3,125,840 + -1.5
3,125,944 + RR42_RS34310 0.12 -0.3
3,125,945 - RR42_RS34310 0.12 -0.5
3,125,965 + RR42_RS34310 0.15 +0.8
3,125,965 + RR42_RS34310 0.15 -0.6
3,125,966 - RR42_RS34310 0.15 -0.5
3,125,966 - RR42_RS34310 0.15 +0.2
3,126,086 - RR42_RS34310 0.33 -1.3
3,126,227 - RR42_RS34310 0.54 -1.8
3,126,236 - RR42_RS34310 0.55 -1.8
3,126,307 + RR42_RS34310 0.66 +0.4
3,126,307 + RR42_RS34310 0.66 +0.3
3,126,307 + RR42_RS34310 0.66 +1.0
3,126,307 + RR42_RS34310 0.66 +1.0
3,126,308 - RR42_RS34310 0.66 +0.4
3,126,308 - RR42_RS34310 0.66 -0.3
3,126,311 + RR42_RS34310 0.67 -0.0
3,126,311 + RR42_RS34310 0.67 -0.4
3,126,312 - RR42_RS34310 0.67 -0.6
3,126,312 - +2.0
3,126,312 - RR42_RS34310 0.67 -2.7
3,126,312 - RR42_RS34310 0.67 -2.1
3,126,313 + RR42_RS34310 0.67 -1.6
3,126,313 + RR42_RS34310 0.67 -1.0
3,126,313 + RR42_RS34310 0.67 -1.0
3,126,313 + RR42_RS34310 0.67 +0.5
3,126,313 + RR42_RS34310 0.67 -0.6
3,126,313 + RR42_RS34310 0.67 -0.4
3,126,314 - RR42_RS34310 0.67 -0.6
3,126,314 - RR42_RS34310 0.67 +0.3
3,126,314 - RR42_RS34310 0.67 -0.0
3,126,314 - RR42_RS34310 0.67 -0.9
3,126,314 - RR42_RS34310 0.67 +1.6
3,126,314 - RR42_RS34310 0.67 -0.1
3,126,314 - RR42_RS34310 0.67 -1.5
3,126,383 + RR42_RS34310 0.77 -2.2
3,126,383 + RR42_RS34310 0.77 +1.4
3,126,679 + RR42_RS34315 0.18 -0.3
3,126,679 + RR42_RS34315 0.18 +0.1
3,126,679 + RR42_RS34315 0.18 +0.3
3,126,680 - RR42_RS34315 0.18 -1.5
3,126,680 - RR42_RS34315 0.18 -0.0
3,126,727 + RR42_RS34315 0.24 +0.3
3,126,809 - RR42_RS34315 0.35 -0.3
3,126,914 - RR42_RS34315 0.49 -0.9
3,126,955 + RR42_RS34315 0.54 +0.4
3,126,961 + RR42_RS34315 0.55 -0.3
3,126,961 + RR42_RS34315 0.55 -0.5
3,126,962 - RR42_RS34315 0.55 +0.6
3,127,128 - RR42_RS34315 0.77 -0.3
3,127,128 - RR42_RS34315 0.77 -3.2
3,127,128 - RR42_RS34315 0.77 +1.3
3,127,208 + RR42_RS34315 0.87 +0.7
3,127,209 - RR42_RS34315 0.87 -0.9
3,127,209 - RR42_RS34315 0.87 -0.7
3,127,209 - RR42_RS34315 0.87 -0.0
3,127,210 + RR42_RS34315 0.88 -1.8
3,127,210 + RR42_RS34315 0.88 -0.2

Or see this region's nucleotide sequence