Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32410

Experiment: R2A with Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS32400 and RR42_RS32405 are separated by 203 nucleotidesRR42_RS32405 and RR42_RS32410 overlap by 4 nucleotidesRR42_RS32410 and RR42_RS32415 are separated by 912 nucleotides RR42_RS32400: RR42_RS32400 - hypothetical protein, at 2,664,081 to 2,664,551 _RS32400 RR42_RS32405: RR42_RS32405 - anti-sigma factor, at 2,664,755 to 2,665,546 _RS32405 RR42_RS32410: RR42_RS32410 - RNA polymerase subunit sigma-24, at 2,665,543 to 2,666,091 _RS32410 RR42_RS32415: RR42_RS32415 - hemolysin D, at 2,667,004 to 2,668,236 _RS32415 Position (kb) 2665 2666 2667Strain fitness (log2 ratio) -2 -1 0 1at 2664.722 kb on + strandat 2664.756 kb on + strandat 2664.756 kb on + strandat 2664.756 kb on + strandat 2664.757 kb on - strandat 2664.757 kb on - strandat 2664.757 kb on - strandat 2664.873 kb on + strand, within RR42_RS32405at 2664.942 kb on + strand, within RR42_RS32405at 2664.942 kb on + strand, within RR42_RS32405at 2664.942 kb on + strand, within RR42_RS32405at 2664.943 kb on - strand, within RR42_RS32405at 2664.943 kb on - strand, within RR42_RS32405at 2664.975 kb on + strand, within RR42_RS32405at 2664.976 kb on - strand, within RR42_RS32405at 2664.976 kb on - strand, within RR42_RS32405at 2665.164 kb on + strand, within RR42_RS32405at 2665.164 kb on + strand, within RR42_RS32405at 2665.164 kb on + strand, within RR42_RS32405at 2665.165 kb on - strand, within RR42_RS32405at 2665.165 kb on - strand, within RR42_RS32405at 2665.165 kb on - strand, within RR42_RS32405at 2665.165 kb on - strand, within RR42_RS32405at 2665.567 kb on + strandat 2665.574 kb on - strandat 2665.574 kb on - strandat 2665.898 kb on - strand, within RR42_RS32410at 2665.901 kb on + strand, within RR42_RS32410at 2666.042 kb on + strandat 2666.528 kb on + strandat 2666.528 kb on + strandat 2666.529 kb on - strandat 2667.033 kb on + strandat 2667.033 kb on + strandat 2667.034 kb on - strandat 2667.057 kb on - strandat 2667.057 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml
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2,664,722 + +0.6
2,664,756 + -0.8
2,664,756 + +0.9
2,664,756 + -0.8
2,664,757 - -0.7
2,664,757 - -1.1
2,664,757 - -1.8
2,664,873 + RR42_RS32405 0.15 -1.5
2,664,942 + RR42_RS32405 0.24 +0.1
2,664,942 + RR42_RS32405 0.24 -0.5
2,664,942 + RR42_RS32405 0.24 +0.9
2,664,943 - RR42_RS32405 0.24 -0.3
2,664,943 - RR42_RS32405 0.24 +0.3
2,664,975 + RR42_RS32405 0.28 +0.0
2,664,976 - RR42_RS32405 0.28 -0.2
2,664,976 - RR42_RS32405 0.28 -0.1
2,665,164 + RR42_RS32405 0.52 +0.7
2,665,164 + RR42_RS32405 0.52 +0.0
2,665,164 + RR42_RS32405 0.52 -1.0
2,665,165 - RR42_RS32405 0.52 +1.0
2,665,165 - RR42_RS32405 0.52 -0.6
2,665,165 - RR42_RS32405 0.52 +1.0
2,665,165 - RR42_RS32405 0.52 +0.9
2,665,567 + -0.3
2,665,574 - +0.0
2,665,574 - +0.4
2,665,898 - RR42_RS32410 0.65 -0.3
2,665,901 + RR42_RS32410 0.65 +1.0
2,666,042 + +0.8
2,666,528 + -0.4
2,666,528 + -1.4
2,666,529 - -1.3
2,667,033 + -2.4
2,667,033 + -0.3
2,667,034 - +0.4
2,667,057 - -0.5
2,667,057 - -1.5

Or see this region's nucleotide sequence