Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29895

Experiment: R2A with Cisplatin 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Cisplatin 0.001 mg/ml
2,072,020	-		RR42_RS29890	0.42	-0.2
2,072,020	-		RR42_RS29890	0.42	-0.4
2,072,020	-		RR42_RS29890	0.42	+1.8
2,072,020	-		RR42_RS29890	0.42	+0.4
2,072,020	-		RR42_RS29890	0.42	+0.6
2,072,024	-		RR42_RS29890	0.43	+0.2
2,072,083	-		RR42_RS29890	0.49	+1.0
2,072,161	+		RR42_RS29890	0.58	+1.6
2,072,162	-		RR42_RS29890	0.58	+0.5
2,072,178	+		RR42_RS29890	0.60	+1.3
2,072,179	-		RR42_RS29890	0.60	-0.1
2,072,294	+		RR42_RS29890	0.73	-0.4
2,072,294	+		RR42_RS29890	0.73	-0.2
2,072,328	+		RR42_RS29890	0.77	-0.3
2,072,328	+		RR42_RS29890	0.77	+0.6
2,072,432	+		RR42_RS29890	0.89	-1.2
2,072,433	-		RR42_RS29890	0.89	-1.5
2,072,433	-		RR42_RS29890	0.89	-2.2
2,072,433	-		RR42_RS29890	0.89	-0.4
2,072,530	+				+0.5
2,072,531	-				-1.3
2,072,531	-				-1.3
2,072,531	-				-0.7
2,072,553	+				+2.1
2,072,567	-				+1.0
2,072,567	-				-0.1
2,072,592	+				-1.1
2,072,592	+				-0.8
2,072,711	+				-1.0
2,072,711	+				-0.7
2,072,711	+				-0.7
2,072,711	+				+0.0
2,072,711	+				+1.6
2,072,711	+				-0.2
2,072,711	+				-0.2
2,072,711	+				+1.0
2,072,712	-				-1.0
2,072,712	-				-2.2
2,072,712	-				+0.0
2,072,712	-				-0.7
2,072,743	+				+1.0
2,072,743	+				+0.5
2,072,744	-				-0.2
2,072,744	-				-1.4
2,072,744	-				-0.2
2,072,790	-				-2.4
2,072,790	-				+0.2
2,072,858	-				-0.6
2,072,878	+				-1.0
2,072,879	-				-0.6
2,072,934	+				-1.5
2,072,934	+				+0.3
2,072,935	-				-2.4
2,072,939	-				+0.0
2,072,957	+				-0.3
2,072,967	+				-0.2
2,072,971	+				+0.3
2,072,972	-				-0.1
2,072,980	-				+0.6
2,073,172	+		RR42_RS29895	0.11	+0.5
2,073,172	+		RR42_RS29895	0.11	-1.4
2,073,216	+		RR42_RS29895	0.13	-0.1
2,073,216	+		RR42_RS29895	0.13	+0.0
2,073,216	+		RR42_RS29895	0.13	+0.4
2,073,228	+		RR42_RS29895	0.14	+0.8
2,073,229	-		RR42_RS29895	0.14	-1.4
2,073,237	+		RR42_RS29895	0.15	+0.5
2,073,237	+		RR42_RS29895	0.15	-1.3
2,073,238	-		RR42_RS29895	0.15	-1.0
2,073,238	-		RR42_RS29895	0.15	+1.4
2,073,238	-		RR42_RS29895	0.15	-1.0
2,073,309	+		RR42_RS29895	0.19	+0.3
2,073,382	-		RR42_RS29895	0.24	+0.0
2,073,487	+		RR42_RS29895	0.30	+0.6
2,073,487	+		RR42_RS29895	0.30	-0.3
2,073,488	-		RR42_RS29895	0.30	+0.5
2,073,488	-		RR42_RS29895	0.30	+0.3
2,073,800	+		RR42_RS29895	0.50	-0.4
2,073,856	+		RR42_RS29895	0.53	-0.8
2,073,870	+		RR42_RS29895	0.54	+0.3
2,073,870	+		RR42_RS29895	0.54	-2.0
2,073,871	-		RR42_RS29895	0.54	+0.6
2,073,960	+		RR42_RS29895	0.60	+0.2
2,073,960	+		RR42_RS29895	0.60	-0.4
2,073,960	+		RR42_RS29895	0.60	-0.6
2,073,961	-		RR42_RS29895	0.60	+0.0
2,073,984	+		RR42_RS29895	0.61	-0.9
2,073,984	+		RR42_RS29895	0.61	+1.0
2,073,984	+		RR42_RS29895	0.61	-1.2
2,073,984	+		RR42_RS29895	0.61	-0.3
2,073,985	-		RR42_RS29895	0.61	+0.2
2,073,985	-		RR42_RS29895	0.61	-1.0
2,074,164	+		RR42_RS29895	0.72	-0.1
2,074,176	+		RR42_RS29895	0.73	+1.5
2,074,335	+		RR42_RS29895	0.83	-0.9
2,074,336	-		RR42_RS29895	0.83	+0.1
2,074,336	-		RR42_RS29895	0.83	-0.4
2,074,357	-		RR42_RS29895	0.84	+0.1
2,074,357	-		RR42_RS29895	0.84	+0.1
2,074,375	-		RR42_RS29895	0.85	+0.4
2,074,382	+		RR42_RS29895	0.86	-0.4
2,074,382	+		RR42_RS29895	0.86	-1.0
2,074,382	+		RR42_RS29895	0.86	+0.6
2,074,606	-				-0.9
2,074,606	-				-0.9
2,074,610	-				+0.3
2,074,610	-				-0.5
2,074,610	-				-1.4
2,074,613	+				+0.0
2,074,614	-				+2.2
2,074,641	+				+1.5
2,074,642	-				+0.9
2,074,642	-				+0.0
2,074,662	+				-0.3
2,074,662	+				-1.0
2,074,673	+				+1.2
2,074,715	+				+0.7
2,074,716	-				+1.9
2,074,716	-				-0.5
2,074,716	-				-1.0
2,074,716	-				+2.9
2,074,716	-				-2.1
2,074,801	-		RR42_RS29900	0.13	-1.6
2,074,837	+		RR42_RS29900	0.16	-0.8
2,074,838	-		RR42_RS29900	0.16	+0.8
2,074,838	-		RR42_RS29900	0.16	+0.1
2,074,920	-		RR42_RS29900	0.23	-0.6
2,074,920	-		RR42_RS29900	0.23	-0.6
2,074,951	+		RR42_RS29900	0.25	-0.4
2,074,951	+		RR42_RS29900	0.25	+0.6
2,074,952	-		RR42_RS29900	0.25	+2.0
2,074,952	-		RR42_RS29900	0.25	-0.7
2,074,952	-		RR42_RS29900	0.25	-1.5
2,074,952	-		RR42_RS29900	0.25	+0.8
2,074,965	+		RR42_RS29900	0.26	-0.1
2,075,197	+		RR42_RS29900	0.45	+0.8
2,075,197	+		RR42_RS29900	0.45	+0.3
2,075,197	+		RR42_RS29900	0.45	+0.0
2,075,197	+		RR42_RS29900	0.45	+1.0
2,075,197	+		RR42_RS29900	0.45	+0.2
2,075,197	+		RR42_RS29900	0.45	-0.1
2,075,197	+		RR42_RS29900	0.45	-0.4
2,075,197	+		RR42_RS29900	0.45	+0.4
2,075,197	+		RR42_RS29900	0.45	-0.4
2,075,197	+		RR42_RS29900	0.45	-2.0
2,075,198	-		RR42_RS29900	0.45	+0.2
2,075,198	-		RR42_RS29900	0.45	+1.7
2,075,198	-		RR42_RS29900	0.45	+0.0
2,075,257	+		RR42_RS29900	0.50	+0.5
2,075,257	+		RR42_RS29900	0.50	-1.0
2,075,257	+		RR42_RS29900	0.50	-0.7
2,075,257	+		RR42_RS29900	0.50	-1.2
2,075,257	+		RR42_RS29900	0.50	-1.3
2,075,258	-		RR42_RS29900	0.50	+1.2
2,075,266	-		RR42_RS29900	0.51	-0.2
2,075,266	-		RR42_RS29900	0.51	-1.0
2,075,317	+		RR42_RS29900	0.55	-0.2
2,075,378	-		RR42_RS29900	0.60	-2.5
2,075,414	+		RR42_RS29900	0.63	+0.8
2,075,465	+		RR42_RS29900	0.67	-1.1
2,075,514	-		RR42_RS29900	0.71	-0.1
2,075,606	+		RR42_RS29900	0.79	+0.0