Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt
RR42_RS29570: RR42_RS29570 - integrase, at 1,993,518 to 1,994,978
_RS29570
Position (kb)
1993
1994
1995 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1992.534 kb on + strand at 1992.534 kb on + strand at 1992.535 kb on - strand at 1992.535 kb on - strand at 1992.535 kb on - strand at 1992.535 kb on - strand at 1992.620 kb on + strand at 1992.620 kb on + strand at 1992.620 kb on + strand at 1992.642 kb on + strand at 1992.642 kb on + strand at 1992.642 kb on + strand at 1992.643 kb on - strand at 1992.673 kb on - strand at 1992.808 kb on - strand at 1992.808 kb on - strand at 1992.923 kb on + strand at 1992.923 kb on + strand at 1992.924 kb on - strand at 1992.924 kb on - strand at 1992.989 kb on + strand at 1992.989 kb on + strand at 1992.989 kb on + strand at 1992.990 kb on - strand at 1992.990 kb on - strand at 1992.990 kb on - strand at 1993.094 kb on + strand at 1993.233 kb on - strand at 1993.233 kb on - strand at 1993.233 kb on - strand at 1993.343 kb on - strand at 1993.351 kb on + strand at 1993.351 kb on + strand at 1993.351 kb on + strand at 1993.352 kb on - strand at 1993.352 kb on - strand at 1993.352 kb on - strand at 1993.396 kb on + strand at 1993.397 kb on - strand at 1993.397 kb on - strand at 1993.406 kb on + strand at 1993.406 kb on + strand at 1993.406 kb on + strand at 1995.104 kb on + strand at 1995.164 kb on + strand at 1995.164 kb on + strand at 1995.164 kb on + strand at 1995.165 kb on - strand at 1995.183 kb on + strand at 1995.184 kb on - strand at 1995.200 kb on + strand at 1995.200 kb on + strand at 1995.200 kb on + strand at 1995.200 kb on + strand at 1995.201 kb on - strand at 1995.201 kb on - strand at 1995.201 kb on - strand at 1995.204 kb on + strand at 1995.204 kb on + strand at 1995.204 kb on + strand at 1995.204 kb on + strand at 1995.204 kb on + strand at 1995.205 kb on - strand at 1995.205 kb on - strand at 1995.230 kb on + strand at 1995.231 kb on - strand at 1995.231 kb on - strand at 1995.231 kb on - strand at 1995.248 kb on + strand at 1995.248 kb on + strand at 1995.249 kb on - strand at 1995.249 kb on - strand at 1995.249 kb on - strand at 1995.249 kb on - strand at 1995.269 kb on + strand at 1995.269 kb on + strand at 1995.330 kb on + strand at 1995.330 kb on + strand at 1995.331 kb on - strand at 1995.347 kb on + strand at 1995.348 kb on - strand at 1995.348 kb on - strand at 1995.373 kb on - strand at 1995.373 kb on - strand at 1995.417 kb on + strand at 1995.417 kb on + strand at 1995.417 kb on + strand at 1995.418 kb on - strand at 1995.418 kb on - strand at 1995.418 kb on - strand at 1995.459 kb on + strand at 1995.459 kb on + strand at 1995.459 kb on + strand at 1995.459 kb on + strand at 1995.459 kb on + strand at 1995.460 kb on - strand at 1995.473 kb on + strand at 1995.474 kb on - strand at 1995.492 kb on + strand at 1995.492 kb on + strand at 1995.492 kb on + strand at 1995.492 kb on + strand at 1995.493 kb on - strand at 1995.493 kb on - strand at 1995.518 kb on - strand at 1995.526 kb on + strand at 1995.527 kb on - strand at 1995.527 kb on - strand at 1995.539 kb on + strand at 1995.539 kb on + strand at 1995.540 kb on - strand at 1995.540 kb on - strand at 1995.556 kb on + strand at 1995.556 kb on + strand at 1995.557 kb on - strand at 1995.563 kb on + strand at 1995.564 kb on - strand at 1995.621 kb on + strand at 1995.621 kb on + strand at 1995.621 kb on + strand at 1995.629 kb on + strand at 1995.629 kb on + strand at 1995.629 kb on + strand at 1995.629 kb on + strand at 1995.630 kb on - strand at 1995.630 kb on - strand at 1995.630 kb on - strand at 1995.630 kb on - strand at 1995.688 kb on + strand at 1995.688 kb on + strand at 1995.688 kb on + strand at 1995.689 kb on - strand at 1995.803 kb on + strand at 1995.804 kb on - strand at 1995.804 kb on - strand at 1995.805 kb on + strand at 1995.805 kb on + strand at 1995.806 kb on - strand at 1995.900 kb on + strand at 1995.918 kb on + strand at 1995.918 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 1,992,534 + -0.3 1,992,534 + +0.9 1,992,535 - +1.3 1,992,535 - +0.0 1,992,535 - +0.6 1,992,535 - +0.6 1,992,620 + -2.1 1,992,620 + +0.0 1,992,620 + +0.4 1,992,642 + -0.5 1,992,642 + -0.6 1,992,642 + +0.1 1,992,643 - -1.0 1,992,673 - -1.0 1,992,808 - +0.4 1,992,808 - -0.2 1,992,923 + +0.0 1,992,923 + -2.3 1,992,924 - -0.6 1,992,924 - +0.8 1,992,989 + +1.6 1,992,989 + -1.4 1,992,989 + -0.3 1,992,990 - +0.0 1,992,990 - -1.1 1,992,990 - -1.0 1,993,094 + -0.7 1,993,233 - +0.5 1,993,233 - +0.2 1,993,233 - -0.3 1,993,343 - +0.6 1,993,351 + +0.4 1,993,351 + -0.2 1,993,351 + -0.3 1,993,352 - +0.3 1,993,352 - +0.8 1,993,352 - +0.0 1,993,396 + +0.5 1,993,397 - +0.4 1,993,397 - -0.6 1,993,406 + -1.0 1,993,406 + +0.0 1,993,406 + -1.8 1,995,104 + -0.5 1,995,164 + -0.2 1,995,164 + -0.4 1,995,164 + -0.0 1,995,165 - +0.8 1,995,183 + -1.0 1,995,184 - -0.2 1,995,200 + -0.2 1,995,200 + -0.2 1,995,200 + -1.4 1,995,200 + +1.1 1,995,201 - +0.4 1,995,201 - -0.6 1,995,201 - -0.9 1,995,204 + -0.5 1,995,204 + +0.9 1,995,204 + +0.2 1,995,204 + -0.2 1,995,204 + -0.1 1,995,205 - -2.5 1,995,205 - -2.8 1,995,230 + -0.2 1,995,231 - +1.3 1,995,231 - -1.4 1,995,231 - -0.7 1,995,248 + +0.6 1,995,248 + +1.3 1,995,249 - -1.5 1,995,249 - -0.2 1,995,249 - +0.8 1,995,249 - +0.5 1,995,269 + +0.3 1,995,269 + -1.1 1,995,330 + -0.7 1,995,330 + +0.7 1,995,331 - -1.2 1,995,347 + +1.6 1,995,348 - -0.4 1,995,348 - +0.3 1,995,373 - -0.5 1,995,373 - -1.3 1,995,417 + -0.5 1,995,417 + -0.2 1,995,417 + +2.0 1,995,418 - +1.2 1,995,418 - -0.7 1,995,418 - +0.8 1,995,459 + +0.5 1,995,459 + +0.4 1,995,459 + +0.0 1,995,459 + -0.8 1,995,459 + +0.1 1,995,460 - +0.2 1,995,473 + -0.0 1,995,474 - -0.1 1,995,492 + +0.1 1,995,492 + -2.1 1,995,492 + +0.4 1,995,492 + -1.2 1,995,493 - -1.1 1,995,493 - +0.3 1,995,518 - -0.4 1,995,526 + -0.6 1,995,527 - -0.2 1,995,527 - -1.6 1,995,539 + +0.4 1,995,539 + +0.5 1,995,540 - -1.5 1,995,540 - -0.4 1,995,556 + +2.1 1,995,556 + -0.8 1,995,557 - -0.5 1,995,563 + -2.4 1,995,564 - +1.4 1,995,621 + -0.1 1,995,621 + +0.1 1,995,621 + -0.0 1,995,629 + -1.8 1,995,629 + -0.0 1,995,629 + +1.8 1,995,629 + -0.5 1,995,630 - +0.3 1,995,630 - -2.4 1,995,630 - -2.4 1,995,630 - +1.1 1,995,688 + +0.8 1,995,688 + +0.7 1,995,688 + +0.9 1,995,689 - -0.1 1,995,803 + +0.8 1,995,804 - -0.1 1,995,804 - +1.1 1,995,805 + +1.2 1,995,805 + +0.3 1,995,806 - +0.2 1,995,900 + +0.1 1,995,918 + -0.0 1,995,918 + -0.0
Or see this region's nucleotide sequence