Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26280

Experiment: R2A with Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26270 and RR42_RS26275 are separated by 254 nucleotidesRR42_RS26275 and RR42_RS26280 are separated by 58 nucleotidesRR42_RS26280 and RR42_RS26285 are separated by 100 nucleotidesRR42_RS26285 and RR42_RS26290 are separated by 276 nucleotides RR42_RS26270: RR42_RS26270 - hydroperoxidase, at 1,252,718 to 1,254,955 _RS26270 RR42_RS26275: RR42_RS26275 - CopG family transcriptional regulator, at 1,255,210 to 1,255,641 _RS26275 RR42_RS26280: RR42_RS26280 - poly(3-hydroxyalkanoate) depolymerase, at 1,255,700 to 1,256,770 _RS26280 RR42_RS26285: RR42_RS26285 - ureidoglycolate hydrolase, at 1,256,871 to 1,257,389 _RS26285 RR42_RS26290: RR42_RS26290 - MFS transporter permease, at 1,257,666 to 1,258,985 _RS26290 Position (kb) 1255 1256 1257Strain fitness (log2 ratio) -2 -1 0 1 2at 1254.756 kb on + strandat 1254.757 kb on - strandat 1254.768 kb on - strandat 1254.953 kb on + strandat 1254.954 kb on - strandat 1254.954 kb on - strandat 1255.027 kb on + strandat 1255.027 kb on + strandat 1255.028 kb on - strandat 1255.113 kb on - strandat 1255.169 kb on + strandat 1255.169 kb on + strandat 1255.169 kb on + strandat 1255.190 kb on + strandat 1255.336 kb on + strand, within RR42_RS26275at 1255.336 kb on + strand, within RR42_RS26275at 1255.337 kb on - strand, within RR42_RS26275at 1255.964 kb on + strand, within RR42_RS26280at 1255.965 kb on - strand, within RR42_RS26280at 1255.965 kb on - strand, within RR42_RS26280at 1255.973 kb on + strand, within RR42_RS26280at 1255.973 kb on + strand, within RR42_RS26280at 1255.973 kb on + strand, within RR42_RS26280at 1255.973 kb on + strand, within RR42_RS26280at 1255.974 kb on - strand, within RR42_RS26280at 1256.032 kb on + strand, within RR42_RS26280at 1256.033 kb on - strand, within RR42_RS26280at 1256.033 kb on - strand, within RR42_RS26280at 1256.258 kb on + strand, within RR42_RS26280at 1256.258 kb on + strand, within RR42_RS26280at 1256.485 kb on + strand, within RR42_RS26280at 1256.630 kb on + strand, within RR42_RS26280at 1256.630 kb on + strand, within RR42_RS26280at 1256.631 kb on - strand, within RR42_RS26280at 1256.674 kb on + strandat 1256.674 kb on + strandat 1256.674 kb on + strandat 1256.675 kb on - strandat 1256.675 kb on - strandat 1256.675 kb on - strandat 1256.675 kb on - strandat 1256.687 kb on + strandat 1256.768 kb on + strandat 1256.768 kb on + strandat 1256.768 kb on + strandat 1256.768 kb on + strandat 1256.769 kb on - strandat 1256.769 kb on - strandat 1256.769 kb on - strandat 1256.769 kb on - strandat 1256.887 kb on + strandat 1256.887 kb on + strandat 1256.888 kb on - strandat 1257.004 kb on + strand, within RR42_RS26285at 1257.004 kb on + strand, within RR42_RS26285at 1257.004 kb on + strand, within RR42_RS26285at 1257.005 kb on - strand, within RR42_RS26285at 1257.172 kb on + strand, within RR42_RS26285at 1257.331 kb on - strand, within RR42_RS26285at 1257.536 kb on + strandat 1257.536 kb on + strandat 1257.536 kb on + strandat 1257.736 kb on - strandat 1257.736 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml
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1,254,756 + +0.2
1,254,757 - +0.3
1,254,768 - +1.0
1,254,953 + -0.1
1,254,954 - +0.7
1,254,954 - -1.0
1,255,027 + -0.2
1,255,027 + +1.0
1,255,028 - +0.1
1,255,113 - -2.0
1,255,169 + -0.6
1,255,169 + -0.4
1,255,169 + -0.6
1,255,190 + -0.6
1,255,336 + RR42_RS26275 0.29 +0.6
1,255,336 + RR42_RS26275 0.29 +1.4
1,255,337 - RR42_RS26275 0.29 -0.4
1,255,964 + RR42_RS26280 0.25 +0.2
1,255,965 - RR42_RS26280 0.25 +1.2
1,255,965 - RR42_RS26280 0.25 -0.1
1,255,973 + RR42_RS26280 0.25 +1.0
1,255,973 + RR42_RS26280 0.25 -0.6
1,255,973 + RR42_RS26280 0.25 +1.5
1,255,973 + RR42_RS26280 0.25 -2.0
1,255,974 - RR42_RS26280 0.26 +0.7
1,256,032 + RR42_RS26280 0.31 -1.0
1,256,033 - RR42_RS26280 0.31 -1.0
1,256,033 - RR42_RS26280 0.31 +0.3
1,256,258 + RR42_RS26280 0.52 +0.0
1,256,258 + RR42_RS26280 0.52 +0.1
1,256,485 + RR42_RS26280 0.73 +0.1
1,256,630 + RR42_RS26280 0.87 +1.0
1,256,630 + RR42_RS26280 0.87 +0.6
1,256,631 - RR42_RS26280 0.87 +2.0
1,256,674 + -2.1
1,256,674 + +1.6
1,256,674 + +0.0
1,256,675 - -0.9
1,256,675 - +0.6
1,256,675 - +0.3
1,256,675 - +1.3
1,256,687 + -2.1
1,256,768 + +0.3
1,256,768 + -0.4
1,256,768 + +0.1
1,256,768 + -1.4
1,256,769 - +0.8
1,256,769 - +0.1
1,256,769 - +1.7
1,256,769 - +0.1
1,256,887 + -1.4
1,256,887 + +2.3
1,256,888 - -1.0
1,257,004 + RR42_RS26285 0.26 +0.0
1,257,004 + RR42_RS26285 0.26 -0.3
1,257,004 + RR42_RS26285 0.26 -0.8
1,257,005 - RR42_RS26285 0.26 -0.1
1,257,172 + RR42_RS26285 0.58 -0.7
1,257,331 - RR42_RS26285 0.89 -1.2
1,257,536 + +1.3
1,257,536 + -0.4
1,257,536 + -0.6
1,257,736 - -0.5
1,257,736 - +0.2

Or see this region's nucleotide sequence