Experiment: R2A with Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24820 and RR42_RS24825 are separated by 129 nucleotides RR42_RS24825 and RR42_RS24830 are separated by 35 nucleotides RR42_RS24830 and RR42_RS24835 are separated by 34 nucleotides
RR42_RS24820: RR42_RS24820 - hypothetical protein, at 905,688 to 906,893
_RS24820
RR42_RS24825: RR42_RS24825 - carnitine dehydratase, at 907,023 to 908,177
_RS24825
RR42_RS24830: RR42_RS24830 - 3-oxoacyl-ACP reductase, at 908,213 to 909,013
_RS24830
RR42_RS24835: RR42_RS24835 - carnitine dehydratase, at 909,048 to 910,385
_RS24835
Position (kb) 907
908
909 Strain fitness (log2 ratio) -2
-1
0
1
2 at 906.062 kb on - strand, within RR42_RS24820 at 906.062 kb on - strand, within RR42_RS24820 at 906.334 kb on - strand, within RR42_RS24820 at 906.402 kb on + strand, within RR42_RS24820 at 906.892 kb on - strand at 907.078 kb on + strand at 907.219 kb on + strand, within RR42_RS24825 at 907.368 kb on + strand, within RR42_RS24825 at 907.368 kb on + strand, within RR42_RS24825 at 907.434 kb on + strand, within RR42_RS24825 at 907.434 kb on + strand, within RR42_RS24825 at 907.434 kb on + strand, within RR42_RS24825 at 907.435 kb on - strand, within RR42_RS24825 at 907.435 kb on - strand, within RR42_RS24825 at 907.435 kb on - strand, within RR42_RS24825 at 907.533 kb on + strand, within RR42_RS24825 at 907.534 kb on - strand, within RR42_RS24825 at 907.644 kb on + strand, within RR42_RS24825 at 907.645 kb on - strand, within RR42_RS24825 at 907.645 kb on - strand, within RR42_RS24825 at 907.716 kb on + strand, within RR42_RS24825 at 907.716 kb on + strand, within RR42_RS24825 at 907.716 kb on + strand, within RR42_RS24825 at 907.717 kb on - strand, within RR42_RS24825 at 907.717 kb on - strand, within RR42_RS24825 at 907.726 kb on - strand, within RR42_RS24825 at 907.787 kb on + strand, within RR42_RS24825 at 907.787 kb on + strand, within RR42_RS24825 at 908.262 kb on + strand at 908.263 kb on - strand at 908.306 kb on - strand, within RR42_RS24830 at 908.355 kb on + strand, within RR42_RS24830 at 908.355 kb on + strand, within RR42_RS24830 at 908.356 kb on - strand, within RR42_RS24830 at 908.356 kb on - strand, within RR42_RS24830 at 909.125 kb on + strand at 909.126 kb on - strand at 909.126 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cisplatin 0.001 mg/ml remove 906,062 - RR42_RS24820 0.31 -0.3 906,062 - RR42_RS24820 0.31 -1.9 906,334 - RR42_RS24820 0.54 -1.7 906,402 + RR42_RS24820 0.59 +0.0 906,892 - +0.5 907,078 + -1.4 907,219 + RR42_RS24825 0.17 -0.2 907,368 + RR42_RS24825 0.30 +0.4 907,368 + RR42_RS24825 0.30 -0.1 907,434 + RR42_RS24825 0.36 -0.8 907,434 + RR42_RS24825 0.36 -0.3 907,434 + RR42_RS24825 0.36 +1.0 907,435 - RR42_RS24825 0.36 -0.1 907,435 - RR42_RS24825 0.36 -1.8 907,435 - RR42_RS24825 0.36 +0.5 907,533 + RR42_RS24825 0.44 +1.4 907,534 - RR42_RS24825 0.44 -2.0 907,644 + RR42_RS24825 0.54 +0.0 907,645 - RR42_RS24825 0.54 +0.3 907,645 - RR42_RS24825 0.54 -1.1 907,716 + RR42_RS24825 0.60 -2.1 907,716 + RR42_RS24825 0.60 +1.0 907,716 + RR42_RS24825 0.60 +1.0 907,717 - RR42_RS24825 0.60 -0.1 907,717 - RR42_RS24825 0.60 +0.3 907,726 - RR42_RS24825 0.61 -1.0 907,787 + RR42_RS24825 0.66 +0.4 907,787 + RR42_RS24825 0.66 -0.6 908,262 + -0.1 908,263 - +1.3 908,306 - RR42_RS24830 0.12 -1.1 908,355 + RR42_RS24830 0.18 +0.3 908,355 + RR42_RS24830 0.18 +0.1 908,356 - RR42_RS24830 0.18 +0.5 908,356 - RR42_RS24830 0.18 +0.6 909,125 + +1.9 909,126 - -0.9 909,126 - -0.5
Or see this region's nucleotide sequence